Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1111
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   2.6  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   7.9  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
 Frame = +2

Query: 197 ILSMFFVCF-PLFKINIFFCINLVTTCKSNLIDQGVLR-ISIIGTDILEK---CAFQILN 361
           ++  F  C  PLF I +   + + T C ++ +   VL  IS I  D+L +   C     N
Sbjct: 53  LVEFFIFCLIPLFVIYVSSKVGVFTLCIASFLPSFVLHVISPINWDVLRRKPGCCLTKKN 112

Query: 362 SC*VFMNITAYKFNRTYLILVLK*YFIELGINIFSETFSNL 484
                  I    F R+ ++LV     + +   +F   ++ +
Sbjct: 113 ENTFDRRIAGVTFYRSQMMLVTVTCILAVDFTLFPRRYAKV 153


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 477 ENVSLNILIPNSMKYYFNTKIKYVR 403
           EN SLN ++  S+K+YFN   + VR
Sbjct: 619 ENQSLNNILVASLKFYFNLLHRKVR 643


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 123 KPTRLCNSNIGNIWI 167
           +P R+C S  GN+WI
Sbjct: 266 QPLRICISETGNLWI 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,916
Number of Sequences: 5004
Number of extensions: 42106
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)