Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1111
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   28   6.3  
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)         28   6.3  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     27   8.3  

>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 198 IVCKQFVTWSRSRCCQCWNYIILSAYIC-LASVLVPTRDHVSARASF 61
           I C+Q +TW  S C       + S Y+C + S     R H   R  F
Sbjct: 119 IQCEQCLTWQHSECVGLTELTVPSKYLCYVCSNPKGLRRHAKYRNDF 165


>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
          Length = 1038

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 513 HMNSIQDNLNRFENVSLNILIPNSMKYYFNTKIKYVR 403
           H NS QDN NR++ +   I I  + +Y   T I+ +R
Sbjct: 414 HQNSHQDNPNRYD-IKTAIRIIRTERYDIKTAIRVIR 449


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 231 NRGKQTKNIDNIVCKQFVTWSRSRCCQCWNYIIL-SAYICLASVLV 97
           N G   KN  N++    V W+      CW++  L S++ C   VL+
Sbjct: 529 NPGPDGKNGKNVLVGLGVRWTHRLHVTCWSWFTLDSSFTCYLLVLM 574


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,267,572
Number of Sequences: 59808
Number of extensions: 300180
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)