Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1111
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 29 2.4
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 29 2.4
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 29 2.4
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 29 2.4
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 29 2.4
Z35663-14|CAA84733.1| 805|Caenorhabditis elegans Hypothetical p... 28 5.5
AC025726-26|AAK73933.2| 129|Caenorhabditis elegans Hypothetical... 28 5.5
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 27 7.2
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 27 7.2
Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 27 9.5
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 206 MFFVCFPLFKINIFFCINLVT 268
MFF+ FP F +NIF + ++T
Sbjct: 988 MFFIVFPFFFVNIFVALIIIT 1008
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 206 MFFVCFPLFKINIFFCINLVT 268
MFF+ FP F +NIF + ++T
Sbjct: 988 MFFIVFPFFFVNIFVALIIIT 1008
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 206 MFFVCFPLFKINIFFCINLVT 268
MFF+ FP F +NIF + ++T
Sbjct: 1107 MFFIVFPFFFVNIFVALIIIT 1127
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 206 MFFVCFPLFKINIFFCINLVT 268
MFF+ FP F +NIF + ++T
Sbjct: 594 MFFIVFPFFFVNIFVALIIIT 614
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 206 MFFVCFPLFKINIFFCINLVT 268
MFF+ FP F +NIF + ++T
Sbjct: 1107 MFFIVFPFFFVNIFVALIIIT 1127
>Z35663-14|CAA84733.1| 805|Caenorhabditis elegans Hypothetical
protein T04A8.16 protein.
Length = 805
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 218 CFPLFKINIFFCINLVTTCKSNL 286
C P+F+ N+ CIN KSN+
Sbjct: 48 CLPIFRKNVMECINRAEFLKSNI 70
>AC025726-26|AAK73933.2| 129|Caenorhabditis elegans Hypothetical
protein Y71G12B.7 protein.
Length = 129
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +2
Query: 161 LDRD-HVTNCLHTILSMFFVCFP--LFKINIFFCINLV 265
LDRD NC+H+ LS+FF CF +F + + + +N++
Sbjct: 86 LDRDMSYRNCIHSRLSIFF-CFGEFMFILKLIWFLNIL 122
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 286 NRSRCIKDFNYRHRYIRKV 342
NR+ CIK F+Y +Y+R++
Sbjct: 739 NRAHCIKVFSYEGQYLRQI 757
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 286 NRSRCIKDFNYRHRYIRKV 342
NR+ CIK F+Y +Y+R++
Sbjct: 739 NRAHCIKVFSYEGQYLRQI 757
>Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical
protein F27E5.5 protein.
Length = 377
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +2
Query: 197 ILSMFFVCFPLFKINIFFCINLVTTCKSNLIDQGVLRISIIGTDILEKCAFQILNSC*VF 376
I+ +FF CF F +NIFF I + T + LRI +I T + + + I +
Sbjct: 32 IVELFF-CFIAFPLNIFFIIIIANTTTLH----RNLRILLISTCVAD-AIYAISRYMILI 85
Query: 377 MNITAYKFN 403
+ AY FN
Sbjct: 86 PLLVAYLFN 94
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/46 (28%), Positives = 30/46 (65%)
Frame = +3
Query: 165 IATMLQTVYTQYCLCFLFVSLYLKLTFSSALIS*RHAKVI*SIKVY 302
+ +++ V +C+CF++ + YLKL+ + +I H+ +I S++V+
Sbjct: 53 VVSLINLVIQLFCVCFIWKNGYLKLS-TFFIILFIHSSII-SLRVF 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,236
Number of Sequences: 27780
Number of extensions: 235285
Number of successful extensions: 587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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