Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1111
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr...    31   0.42 
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    30   0.96 
At5g25050.1 68418.m02969 integral membrane transporter family pr...    30   1.3  
At5g25040.1 68418.m02967 integral membrane transporter family pr...    29   1.7  
At1g31660.1 68414.m03887 bystin family contains Pfam profile: PF...    29   2.9  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    27   6.8  
At1g22980.1 68414.m02871 expressed protein                             27   9.0  

>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = -3

Query: 89  ATTSPPEPRSLIGRVRREQ--ERLTLTQKIV 3
           ATTSP +P+SL  + RRE+  ERL + Q++V
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERLKVLQELV 234


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = -3

Query: 86  TTSPPEPRSLIGRVRREQ--ERLTLTQKIV 3
           TTSP +P+SL  + RRE+  ERL + Q++V
Sbjct: 199 TTSPKDPQSLAAKNRRERISERLKILQELV 228


>At5g25050.1 68418.m02969 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains 7 transmembrane domains;
           contains Pfam PF03092: BT1 family; contains TIGRFAMS
           TIGR00788: folate/biopterin transporter
          Length = 499

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 132 RLCNSNIGNIWIATMLQTVYTQYCLCFLFV 221
           ++  +  GN+W+A +++ V     LCFLF+
Sbjct: 425 KVTRTEFGNLWLAVLVRNVMRLLPLCFLFL 454


>At5g25040.1 68418.m02967 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains Pfam PF03092: BT1
           family; contains TIGRFAMS TIGR00788: folate/biopterin
           transporter; Interpro IPR001991/ PR00173
           Sodium:dicarboxylater symporter family
          Length = 492

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 105 QMLDRYKPTRLCNSNIGNIWIATMLQTVYTQYCLCFLFV 221
           +ML   K TR   +  GN+W+A +++ V     +CFLF+
Sbjct: 417 KMLHVLKVTR---TEFGNLWLAVLVRNVMRLLPICFLFL 452


>At1g31660.1 68414.m03887 bystin family contains Pfam profile:
           PF05291 Bystin
          Length = 442

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +2

Query: 227 LFKINIFFCINLVTTCKSNLIDQGVLRISIIGTDILEKCAFQILNSC*VFMNITA---YK 397
           L+K + F    L   CKS   +   LR ++I   ILEKC+  +L+SC V +N  A   Y 
Sbjct: 266 LYKPSAFNQGILFPLCKSGTCN---LREAVIIGSILEKCSIPMLHSC-VALNRLAEMDYC 321

Query: 398 FNRTYLILVL 427
              +Y I VL
Sbjct: 322 GTTSYFIKVL 331


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 171  TMLQTVYTQYCLCFLFVSLY 230
            TML T+ +QY LC++ VS++
Sbjct: 1829 TMLGTIASQYYLCYMTVSMF 1848


>At1g22980.1 68414.m02871 expressed protein 
          Length = 362

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 409 RSIKFISGNIHEYLATIEYLKRT 341
           +++K + GN+ E  A +EY+KR+
Sbjct: 280 QTVKILEGNLDEVEAQVEYMKRS 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,513,600
Number of Sequences: 28952
Number of extensions: 202722
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)