Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1110
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    37   0.60 
UniRef50_A6R9C1 Cluster: Predicted protein; n=1; Ajellomyces cap...    35   2.4  
UniRef50_Q3W0L3 Cluster: Regulatory protein, TetR; n=2; Frankia|...    34   3.2  
UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2; ...    34   3.2  
UniRef50_A7RIA3 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.6  
UniRef50_Q9FGX4 Cluster: WD-40 repeat protein-like; n=3; core eu...    33   7.4  
UniRef50_Q7RYE3 Cluster: Predicted protein; n=1; Neurospora cras...    33   7.4  
UniRef50_Q89TT5 Cluster: Blr1693 protein; n=2; Bradyrhizobium ja...    33   9.8  
UniRef50_Q9MA51 Cluster: F22F7.18 protein; n=5; Arabidopsis thal...    33   9.8  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 36.7 bits (81), Expect = 0.60
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 515 VSDGNHSPSGGPYARLPIRQ*KKSYHSLYMPIV 613
           + DGNHSPSG PYA LP R  K    SL++ ++
Sbjct: 1   MGDGNHSPSGRPYASLPTRA-KMKLTSLFIFVI 32


>UniRef50_A6R9C1 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 701

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
 Frame = -1

Query: 564 GRRAYGPPDGEWLPSLTAI------QGPDPSRCPPST*LGRLTIKPTIADVYPSNGVKYP 403
           GR   GP DG   P  +        QG DP    PS+  GR  + PT     PS     P
Sbjct: 47  GRAFCGPLDGNQRPFFSINNGVGHHQGQDPFLSTPSS-AGRAQLSPTATSFTPSGFNINP 105

Query: 402 FNMPWDLTFQDRRQHPHYDKADEALITTAVTFLRHVLERTXSHKSCYIYNIITTYC 235
           F       F     H H+    ++++   + +L    E    H +  ++   +T C
Sbjct: 106 FGFSPRSAFPGDHHHHHHHHQHQSMLPN-MGYLAATSEPDAPHDASNVFGTRSTQC 160


>UniRef50_Q3W0L3 Cluster: Regulatory protein, TetR; n=2;
           Frankia|Rep: Regulatory protein, TetR - Frankia sp.
           EAN1pec
          Length = 595

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +1

Query: 457 EPTQLGT----WWAAAWIWSLDCCERR*PLTIGWAVCSSAYTAIKKKLPQSLYAYREEFS 624
           EP++LG     WW   W W  D   R   + + WA  SS  TAI   + +   AYRE  +
Sbjct: 193 EPSELGFDNLHWWLGEWAWVYD---RYATMFVQWANISSPGTAIPPLVSRFSAAYRERIA 249


>UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4431

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -2

Query: 221  LSTHLFLYLKCFNTNAKTYSDVDVEKNTIDIAIAKGQRNIDNN 93
            +  +LFL  K  N N K YSDV+++KN  +I   K   NI NN
Sbjct: 2954 IKRNLFLQKKRRNENKKEYSDVNIDKNNDNI---KNNDNIKNN 2993


>UniRef50_A7RIA3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 377

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
 Frame = +1

Query: 16  VTLLIQFLFLIFSAS-N*RYQRHKEI*LLSIFLCPFAMAISIVFFST---STSL*VLAFV 183
           V +LI   +L+   S N R+     +  L + + PF +++ I  F T   ST   V+AF+
Sbjct: 106 VYILISRPYLLHQTSPNGRFFLSLAVSDLLVGIFPF-LSVQICVFGTPCNSTIWAVIAFL 164

Query: 184 LKHFKYKNKCVERLCTVTIRRYNIIDITRFVTXCSF*NVT*EGHGCSY*SLISFIIMWML 363
           +K     N  V  LC +T+ RY       +     F ++T EGH  +   LIS  + W++
Sbjct: 165 VK--VVINSSVTSLCLLTMDRY-------WAVVHPFSHITMEGHIST---LISIAVAWIV 212

Query: 364 PSILK 378
           P IL+
Sbjct: 213 PPILE 217


>UniRef50_Q9FGX4 Cluster: WD-40 repeat protein-like; n=3; core
            eudicotyledons|Rep: WD-40 repeat protein-like -
            Arabidopsis thaliana (Mouse-ear cress)
          Length = 1576

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
 Frame = -1

Query: 627  KREFFTIGI*RLW*LFFYCRIGRRAYGPPDGEWLPS-LTAIQGPDPSRCPPST*LGRLTI 451
            +R  +   I R W     C++  R  G  DG W    + A++   P    P +   R T+
Sbjct: 1383 ERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSPDF--PDSPWERYTV 1440

Query: 450  KPTIADVYPSNGVKYPFNMPWDLTFQDRR-QHPHYDKADEALITTAVTFLRHVLERT 283
            K      Y S+  +   + PW+L   D + + PH D      + +A+T L    +RT
Sbjct: 1441 K------YKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLLSALTKLETSDKRT 1491


>UniRef50_Q7RYE3 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 717

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = -1

Query: 564 GRRAYGPPDGEWLPSLTAIQGPDPSRCPPST*LGRLTIKPTIADVYPSNGVKYPFNMPWD 385
           GR++YG P     P   +I G   S  PPS         PT+ D  P + + +P   P  
Sbjct: 429 GRQSYGRPTSRHSPRSRSIAGSGVSSMPPS---------PTVTDFAPISAISHPLRSPAP 479

Query: 384 LTFQDRRQHPHY 349
             F      P Y
Sbjct: 480 PGFSRSSLSPAY 491


>UniRef50_Q89TT5 Cluster: Blr1693 protein; n=2; Bradyrhizobium
            japonicum|Rep: Blr1693 protein - Bradyrhizobium japonicum
          Length = 1716

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 634  KVKKRILHDRHIETVVTFFLLPYRQTSI--RPTRW*VVTVAHSNPGTRSKPLPTKYLTG* 461
            +V  RI+HDR       F LLP    S   R   W ++ V  SN   R +P+   Y +  
Sbjct: 1586 RVFHRIVHDRRDNDTADFLLLPVNDASATDRGRHWSLLFVDRSN---RQRPVAYHYDSYG 1642

Query: 460  AHNKTH 443
             +N+TH
Sbjct: 1643 RYNETH 1648


>UniRef50_Q9MA51 Cluster: F22F7.18 protein; n=5; Arabidopsis
            thaliana|Rep: F22F7.18 protein - Arabidopsis thaliana
            (Mouse-ear cress)
          Length = 1055

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 460  PTQLGTWWAAAWIWSLDCCERR*PLTIGWAVCSSAYTAIKKKLPQSLYAYRE 615
            P++L T   A W+    C ER+ P      +  +A T+++ + PQ+L  YRE
Sbjct: 986  PSELITSCVATWLMIQMCTERQYPPADVAQLIDAAVTSLQPRCPQNLPIYRE 1037


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,456,875
Number of Sequences: 1657284
Number of extensions: 16320345
Number of successful extensions: 34700
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34666
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)