Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1110
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   3.7  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   6.5  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    25   8.6  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 401 KGYFTPFDGYTSAIVGFIVSLPS*VLGGQRLGSGPWIAVSDGNHSPSGGPYARLP 565
           +GYF+P   Y+SA+ G  +S+PS   G  R  S   IA     +     PYA  P
Sbjct: 237 RGYFSPMHTYSSAVPG-PISVPSAPYG--RASS--TIAEVSPMYGSHAAPYASTP 286


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 187 KHFKYKNKCVERLCTVTIRRYNIIDIT 267
           K FK  + CV  +CT+T  R++ +  T
Sbjct: 23  KAFKGNHPCVPSVCTITYSRFHCLPDT 49


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 72  PKTQRNIVV-IYISLSLCYGYIYCIFFYVYVTVGL 173
           PK  R ++  I+  L   Y +IYC  F+V V + L
Sbjct: 139 PKNFRKVIQQIFRRLFRIYAHIYCSHFHVMVAMEL 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,832
Number of Sequences: 5004
Number of extensions: 67635
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)