BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1110 (744 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197... 31 0.73 08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 31 0.97 03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 31 0.97 09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545... 29 2.9 06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 29 2.9 >05_06_0237 + 26618195-26618425,26618518-26618640,26619569-26619736, 26619824-26621497 Length = 731 Score = 31.5 bits (68), Expect = 0.73 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +2 Query: 476 LGGQRLGSGPWIAVSDGNHSPSG 544 + Q+L SG W+AV DG+ PSG Sbjct: 337 IDAQQLASGGWVAVMDGDRVPSG 359 >08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-474205, 474820-474961,475326-475619,476037-476249 Length = 590 Score = 31.1 bits (67), Expect = 0.97 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = -1 Query: 483 PPST*LGRLTIKPTIADVYPSNGVKYPFNMPWDLTFQDRRQHPHYDKADEALITTAVTFL 304 PP T + R T+ + N VK+ N P ++D P++D+ +E T ++ Sbjct: 442 PPQTDMYRRTVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQE 501 Query: 303 RH 298 H Sbjct: 502 EH 503 >03_05_0717 + 27097367-27097621,27097744-27097866,27098136-27098303, 27098393-27100072 Length = 741 Score = 31.1 bits (67), Expect = 0.97 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = +2 Query: 485 QRLGSG-PWIAVSDGNHSPSGGPYARLPI 568 Q+L SG PWI V DG+ PSG RL I Sbjct: 348 QQLPSGKPWIGVMDGDRVPSGDSVHRLTI 376 >09_04_0175 - 15353903-15354005,15354189-15354280,15354408-15354553, 15354661-15354814,15354885-15354985,15355055-15355145, 15355146-15355378,15355501-15355736,15355839-15356066, 15356150-15356370,15356869-15356990,15357125-15357451, 15357616-15357754,15357822-15357901,15358478-15358678, 15359431-15359757,15360144-15360897 Length = 1184 Score = 29.5 bits (63), Expect = 2.9 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -1 Query: 264 YIYNIITTYCDGTQSF 217 Y+YN+ YCDG+ SF Sbjct: 354 YVYNVFVGYCDGSNSF 369 >06_02_0325 + 14428065-14428799,14428916-14428993,14429607-14429844, 14431199-14431296,14431770-14432063,14432418-14432702 Length = 575 Score = 29.5 bits (63), Expect = 2.9 Identities = 16/62 (25%), Positives = 27/62 (43%) Frame = -1 Query: 483 PPST*LGRLTIKPTIADVYPSNGVKYPFNMPWDLTFQDRRQHPHYDKADEALITTAVTFL 304 PP T + R T + N VK+ N P ++D P++D+ +E T ++ Sbjct: 403 PPQTDMYRRTAVADDSGTQIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQE 462 Query: 303 RH 298 H Sbjct: 463 EH 464 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,782,850 Number of Sequences: 37544 Number of extensions: 453665 Number of successful extensions: 891 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 869 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 891 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1968901276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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