Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1110
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197...    31   0.73 
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47...    31   0.97 
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983...    31   0.97 
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545...    29   2.9  
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298...    29   2.9  

>05_06_0237 +
           26618195-26618425,26618518-26618640,26619569-26619736,
           26619824-26621497
          Length = 731

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 476 LGGQRLGSGPWIAVSDGNHSPSG 544
           +  Q+L SG W+AV DG+  PSG
Sbjct: 337 IDAQQLASGGWVAVMDGDRVPSG 359


>08_01_0068 +
           471729-472460,472578-472655,473270-473507,474130-474205,
           474820-474961,475326-475619,476037-476249
          Length = 590

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -1

Query: 483 PPST*LGRLTIKPTIADVYPSNGVKYPFNMPWDLTFQDRRQHPHYDKADEALITTAVTFL 304
           PP T + R T+    +     N VK+  N P    ++D    P++D+ +E   T  ++  
Sbjct: 442 PPQTDMYRRTVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQE 501

Query: 303 RH 298
            H
Sbjct: 502 EH 503


>03_05_0717 +
           27097367-27097621,27097744-27097866,27098136-27098303,
           27098393-27100072
          Length = 741

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 485 QRLGSG-PWIAVSDGNHSPSGGPYARLPI 568
           Q+L SG PWI V DG+  PSG    RL I
Sbjct: 348 QQLPSGKPWIGVMDGDRVPSGDSVHRLTI 376


>09_04_0175 -
           15353903-15354005,15354189-15354280,15354408-15354553,
           15354661-15354814,15354885-15354985,15355055-15355145,
           15355146-15355378,15355501-15355736,15355839-15356066,
           15356150-15356370,15356869-15356990,15357125-15357451,
           15357616-15357754,15357822-15357901,15358478-15358678,
           15359431-15359757,15360144-15360897
          Length = 1184

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 264 YIYNIITTYCDGTQSF 217
           Y+YN+   YCDG+ SF
Sbjct: 354 YVYNVFVGYCDGSNSF 369


>06_02_0325 +
           14428065-14428799,14428916-14428993,14429607-14429844,
           14431199-14431296,14431770-14432063,14432418-14432702
          Length = 575

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -1

Query: 483 PPST*LGRLTIKPTIADVYPSNGVKYPFNMPWDLTFQDRRQHPHYDKADEALITTAVTFL 304
           PP T + R T     +     N VK+  N P    ++D    P++D+ +E   T  ++  
Sbjct: 403 PPQTDMYRRTAVADDSGTQIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQE 462

Query: 303 RH 298
            H
Sbjct: 463 EH 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,782,850
Number of Sequences: 37544
Number of extensions: 453665
Number of successful extensions: 891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)