Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1110
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011191-1|AAR88552.1|  391|Drosophila melanogaster LP08442p pro...    32   0.95 
AE014298-643|AAF45958.1|  630|Drosophila melanogaster CG3546-PA ...    32   0.95 

>BT011191-1|AAR88552.1|  391|Drosophila melanogaster LP08442p
           protein.
          Length = 391

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 519 LTAIQGPDPSRCPPST*LGRLTIKPTIADV-YPSNGVK-YPFNMPWDLTFQDRRQHPHYD 346
           +  +Q   P +  P T      +KP  +DV + S GV  YPF  PW++   D+ +   YD
Sbjct: 199 IVVVQSHQPPKVNPDT-HAVFELKPVQSDVVHQSAGVSFYPFVQPWEVV--DQHEDDDYD 255

Query: 345 KAD 337
           + D
Sbjct: 256 EDD 258


>AE014298-643|AAF45958.1|  630|Drosophila melanogaster CG3546-PA
           protein.
          Length = 630

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 519 LTAIQGPDPSRCPPST*LGRLTIKPTIADV-YPSNGVK-YPFNMPWDLTFQDRRQHPHYD 346
           +  +Q   P +  P T      +KP  +DV + S GV  YPF  PW++   D+ +   YD
Sbjct: 187 IVVVQSHQPPKVNPDT-HAVFELKPVQSDVVHQSAGVSFYPFVQPWEVV--DQHEDDDYD 243

Query: 345 KAD 337
           + D
Sbjct: 244 EDD 246


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,871,182
Number of Sequences: 53049
Number of extensions: 747025
Number of successful extensions: 1853
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1853
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)