Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1110
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z83123-12|CAI70411.1|  329|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z83123-11|CAB05610.3|  335|Caenorhabditis elegans Hypothetical p...    29   3.5  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 546 PPDGEWLPSLTAIQGPDPSRCPPST---*LGRLTIKPTIADVYPSNGVK 409
           PP G+  PS T  QG DP++  P T        T+KP  A V P   VK
Sbjct: 117 PPAGD--PSKTKPQGGDPAKPKPQTGDPYATNSTVKPATAPVTPEPTVK 163


>Z83123-12|CAI70411.1|  329|Caenorhabditis elegans Hypothetical
           protein T04A11.7b protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 72  PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVGLGVC 182
           P++ R I    ++ S+ + +IY IFF +++   LGVC
Sbjct: 146 PQSHREINSKILAYSIPFIHIYPIFFILHMIPALGVC 182


>Z83123-11|CAB05610.3|  335|Caenorhabditis elegans Hypothetical
           protein T04A11.7a protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 72  PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVGLGVC 182
           P++ R I    ++ S+ + +IY IFF +++   LGVC
Sbjct: 146 PQSHREINSKILAYSIPFIHIYPIFFILHMIPALGVC 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,580
Number of Sequences: 27780
Number of extensions: 386026
Number of successful extensions: 809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)