Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1110
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.99 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 100 SIFLCPFAMAISIVFFSTSTSL*VLAFVLKHFKYKNKCVERLC 228
           S    P+A+  S +FF  +TSL V+A V     +      RLC
Sbjct: 136 STMAIPYAVTKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRLC 178


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -2

Query: 233 TVHSLSTHLFLYLKCFNTNAKTYSDVDVEKNTIDIAIAKGQRNIDNNYISLCLW 72
           T H    H     +C+++++   SD D  K      + +G  + D+N   L  W
Sbjct: 231 TTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGNES-DHNDGRLRYW 283


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 112 CPFAMAISIVFFSTSTSL*VLAFVLKHFKYK 204
           CPF   +  + FS++ S  +  FV+    YK
Sbjct: 198 CPFTEHLGYLIFSSTISFYLPLFVMVFTYYK 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 142 FFS-TSTSL*VLAFVLKHFKYKNKCVERLCTVTIRRYN 252
           FFS +STS  V++  LKHF  ++        V+ R Y+
Sbjct: 248 FFSRSSTSRIVISESLKHFTIQSSVTTSKMMVSPRLYD 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 534 EWLPSLTAIQGPDPSRC 484
           E+LP L  I  P P+ C
Sbjct: 579 EFLPKLKGIPDPXPNTC 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,132
Number of Sequences: 438
Number of extensions: 4955
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)