Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1110
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    33   0.20 
At3g05380.1 68416.m00588 myb family transcription factor contain...    33   0.26 
At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting...    29   4.3  
At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 fami...    28   5.7  
At1g32150.1 68414.m03955 bZIP transcription factor family protei...    27   9.9  

>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
            {Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
            repeat (4 copies)
          Length = 1677

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
 Frame = -1

Query: 627  KREFFTIGI*RLW*LFFYCRIGRRAYGPPDGEWLPS-LTAIQGPDPSRCPPST*LGRLTI 451
            +R  +   I R W     C++  R  G  DG W    + A++   P    P +   R T+
Sbjct: 1484 ERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSPDF--PDSPWERYTV 1541

Query: 450  KPTIADVYPSNGVKYPFNMPWDLTFQDRR-QHPHYDKADEALITTAVTFLRHVLERT 283
            K      Y S+  +   + PW+L   D + + PH D      + +A+T L    +RT
Sbjct: 1542 K------YKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLLSALTKLETSDKRT 1592


>At3g05380.1 68416.m00588 myb family transcription factor contains
            Pfam profile:PF00249 Myb-like DNA-binding domain
          Length = 1055

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 460  PTQLGTWWAAAWIWSLDCCERR*PLTIGWAVCSSAYTAIKKKLPQSLYAYRE 615
            P++L T   A W+    C ER+ P      +  +A T+++ + PQ+L  YRE
Sbjct: 986  PSELITSCVATWLMIQMCTERQYPPADVAQLIDAAVTSLQPRCPQNLPIYRE 1037


>At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVG 170
           P+T+ ++ ++++   +CYG+ Y     V   VG
Sbjct: 184 PRTRYSVYIVFLKADICYGFAYVAMEAVVRMVG 216


>At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 632

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 532 VVTVAHSNPGTRSKPLPTKYLTG*AHNKTHYCR--RISIKWSKISLQYAMGPY 380
           ++ +  S+PG   KP+   YL     NK  YCR   I I ++  +L   +  Y
Sbjct: 329 ILLLTGSSPGPCDKPIGNYYLLKAVKNKIDYCRLHGIEIVYNMANLDEELSGY 381


>At1g32150.1 68414.m03955 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 389

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 482 GQRLGSGPWIAVSDGNHSPSGGPYARLPIRQ*KKSYHSLYMPIVKNS 622
           G    SG   +V +G+  PS G   +LPI++ K S  SL M I KN+
Sbjct: 123 GMAEASGNTGSVIEGDGKPSDGK-EKLPIKRSKGSLGSLNMIIGKNN 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,867
Number of Sequences: 28952
Number of extensions: 360581
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)