Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1109
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   109   4e-25
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  109 bits (262), Expect = 4e-25
 Identities = 48/79 (60%), Positives = 59/79 (74%)
 Frame = +3

Query: 261 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 440
           Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFG
Sbjct: 187 QMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFG 246

Query: 441 HPEVYILILPGFGIISHII 497
           HPEVYILI+P FG++SHII
Sbjct: 247 HPEVYILIMPAFGVVSHII 265



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 30/64 (46%), Positives = 36/64 (56%)
 Frame = +1

Query: 1   AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 180
           A+PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L
Sbjct: 100 AYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQL 159

Query: 181 AGIS 192
            GIS
Sbjct: 160 TGIS 163



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 19/34 (55%), Positives = 30/34 (88%)
 Frame = +2

Query: 578 IV*AHHIFTVGIDIDTRAYFTSATIIIAVQQELK 679
           +V +HH+FTVG+D+DTRAYF++AT++IA+   +K
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIK 325


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 33  TPTPLPYIINFKKNCRKWCRNRMNS 107
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,865
Number of Sequences: 5004
Number of extensions: 40276
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)