Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1108X
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 165 4e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 2e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 106 2e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 66 3e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 7e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 3e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 39 6e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.067
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.088
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.82
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.9
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 2.5
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.5
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 27 2.5
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.4
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 5.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 165 bits (401), Expect = 4e-42
Identities = 85/110 (77%), Positives = 90/110 (81%)
Frame = +3
Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182
PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYL
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 189
Query: 183 MKILTERGYSFTTTAEREIVRDIKRSCATSLLTSSRRWPPLHPAAPSRSL 332
MKIL ERGY+F+TTAEREIVRDIK L + L AA S SL
Sbjct: 190 MKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQE---LQTAAQSSSL 236
Score = 126 bits (304), Expect = 2e-30
Identities = 61/86 (70%), Positives = 64/86 (74%)
Frame = +2
Query: 251 QEKLCYVALDFEQEMATAAXXXXXXXXXXXPDGQVITIGNERFRCPEALF*PSFLGMEAC 430
+EKLCYVALDFEQE+ TAA PDGQVITIGNERFR PEALF PS LG+E
Sbjct: 213 KEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENA 272
Query: 431 GIHETIYYSIMKCDVDIRKDLYANTV 508
GIHE Y SIMKCDVDIRKDLY N V
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVV 298
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 508 MSGGTTMYPGIADRMQKEI 564
MSGGTTMYPGIADRMQKEI
Sbjct: 299 MSGGTTMYPGIADRMQKEI 317
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 106 bits (255), Expect = 2e-24
Identities = 46/87 (52%), Positives = 68/87 (78%)
Frame = +3
Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182
PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 135 PALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Query: 183 MKILTERGYSFTTTAEREIVRDIKRSC 263
L + G+ ++AE+EIVR+IK C
Sbjct: 195 QLQLRKSGHELVSSAEKEIVREIKEKC 221
Score = 77.4 bits (182), Expect = 1e-15
Identities = 36/86 (41%), Positives = 48/86 (55%)
Frame = +2
Query: 251 QEKLCYVALDFEQEMATAAXXXXXXXXXXXPDGQVITIGNERFRCPEALF*PSFLGMEAC 430
+EK CYVA DF E+ + PD Q IT+G E F PE LF P +G EA
Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277
Query: 431 GIHETIYYSIMKCDVDIRKDLYANTV 508
G+H ++ SI+ D+D+R LY+N V
Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIV 303
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 106 bits (255), Expect = 2e-24
Identities = 48/82 (58%), Positives = 64/82 (78%)
Frame = +3
Query: 9 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 188
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLIS 191
Query: 189 ILTERGYSFTTTAEREIVRDIK 254
+L +GY+F TA+ E VR++K
Sbjct: 192 LLLRKGYAFNRTADFETVREMK 213
Score = 75.4 bits (177), Expect = 5e-15
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +2
Query: 251 QEKLCYVALDFEQEMATAAXXXXXXXXXXXPDGQVITIGNERFRCPEALF*PSFLGMEAC 430
+EKLCYV+ D E + + PDG+VI +G+ER+ CPE LF P +G E
Sbjct: 213 KEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQP 272
Query: 431 GIHETIYYSIMKCDVDIRKDLY 496
G+ E I+ +I DVDIRK LY
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLY 294
Score = 29.1 bits (62), Expect = 0.47
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 490 LVRQHRMSGGTTMYPGIADRMQKEI 564
L R +SGG++MY G+ R++KEI
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEI 317
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 66.1 bits (154), Expect = 3e-12
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 10/85 (11%)
Frame = +3
Query: 9 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 164
+Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGR
Sbjct: 155 LYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGR 214
Query: 165 DLTDYLMKILTERGY--SFTTTAER 233
D+T ++ +L +R S TAER
Sbjct: 215 DVTYFVQSLLRDRNEPDSSLKTAER 239
Score = 31.9 bits (69), Expect = 0.067
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 356 ITIGNERFRCPEALF*PSFLGME-ACGIHETIYYSIMKCDVDIRKDLYANTV 508
I +G ERF PE F P + + E + + +D+RK LY N V
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIV 331
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 487 GLVRQHRMSGGTTMYPGIADRMQKEI 564
GL + +SGG+T++ +R+Q+++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDL 350
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 46.4 bits (105), Expect = 3e-06
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Frame = +2
Query: 341 PDGQVITIGNERFRCPEALF*PSFLGMEAC---------GIHETIYYSIMKCDVDIRKDL 493
PDG G ERFR E LF PSF + G+HE +Y SI+ CD ++R L
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343
Query: 494 YANTV 508
N V
Sbjct: 344 LNNIV 348
Score = 27.5 bits (58), Expect = 1.4
Identities = 8/19 (42%), Positives = 17/19 (89%)
Frame = +1
Query: 508 MSGGTTMYPGIADRMQKEI 564
++GGT++ PG+++R+Q E+
Sbjct: 349 VTGGTSLIPGLSERLQAEV 367
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 7e-06
Identities = 22/65 (33%), Positives = 39/65 (60%)
Frame = +3
Query: 66 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 245
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 246 DIKRS 260
+IK S
Sbjct: 217 EIKES 221
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +T +L
Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHL 235
Query: 183 MKILTE 200
+L E
Sbjct: 236 QNLLRE 241
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182
PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L
Sbjct: 128 PATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187
Query: 183 MKILTERGY 209
+ L ++ +
Sbjct: 188 AQTLRDKNF 196
Score = 26.6 bits (56), Expect(2) = 0.032
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 341 PDGQVITIGNERFRCPEALF*P 406
PDG + G ER++ PE LF P
Sbjct: 267 PDGSRMMFGAERYQIPEHLFVP 288
Score = 25.0 bits (52), Expect(2) = 0.032
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 431 GIHETIYYSIMKCDVDIRKDLYANTV 508
GI + I +CDVDIR L N +
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVI 351
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 3 PAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 176
P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G +
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSS 204
Query: 177 YLMKILTERGYSF 215
YL+K+ + SF
Sbjct: 205 YLLKLFQIKYPSF 217
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.067
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 7 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 141
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 4 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTRDTHSPTPS 141
PP +P P P VPP S P A + P P P+ + P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 141
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 141
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.088
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +3
Query: 24 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 203
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 204 GYSF 215
+ +
Sbjct: 340 HFPY 343
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.82
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 28 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 132
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 28 PCSRCTRPVVPPVSCWTPATVSPTPCPST 114
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 7 PCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 141
P T S S P VPP S T + PT ST SP P+
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 7 PCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 141
P T S S P VPP S T + PT ST +P P+
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +1
Query: 13 TSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 141
T S S P VPP S T + PT ST SP P+
Sbjct: 237 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 4 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 111
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 279 TSSRRWPPLHPAAPSRSLXNFPMVRSSPSETKDSVAQRLSSNPRSWVWKLAVS 437
TS R PP + + SL N P RSS E D V + P++ K +V+
Sbjct: 47 TSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQTPSTKASVA 99
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 458 IMKCDVDIRKDLYANTVCPVV 520
+ C V++R ++YA +CP+V
Sbjct: 478 LFACPVELRPEVYARMLCPLV 498
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = -1
Query: 550 YGRRFQGTW---WYHRTYGVGV-QVLTDVHVALHDGVIYCLVDTASFH 419
YG + G W Y G Q L D+ ALHD +Y +VDT H
Sbjct: 97 YGEAYHGYWPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDTVVNH 144
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +2
Query: 62 RYRAGLRRRCLPHRAHLRGIRTPPRHPASGLSRSRPHRLPHEDPHRARLLVHYHRRAGNR 241
RYR L R P LR + +PP PA+ SR P RL++ H++ R
Sbjct: 84 RYRGSLLNRNSPS---LRSL-SPPATPATPRSRIEGESQTSAIPQTDRLILENHQQEFER 139
Query: 242 A 244
A
Sbjct: 140 A 140
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 10 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 153
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 147 LDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKRSCATSLLTSSRRWP 299
LD+ R L K +T + SFT +EI IK T+ TS + P
Sbjct: 322 LDMTDRFLPRLRTKHITPKLLSFTPYTAQEISTIIKARLKTAATTSEKNNP 372
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 5.8
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 22 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWT*PV 162
S+ S T P PP + T PA SP P P +T H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 25 KPCSRCTRPVVPPVSCWTPATVSPTPCP 108
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,431
Number of Sequences: 5004
Number of extensions: 54893
Number of successful extensions: 245
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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