BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1108X (565 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 165 4e-42 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 2e-24 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 106 2e-24 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 66 3e-12 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 3e-06 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 7e-06 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 3e-04 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 39 6e-04 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.067 SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.088 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.82 SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 1.9 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9 SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.9 SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 2.5 SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.5 SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 27 2.5 SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.3 SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.4 SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 5.8 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.8 SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.7 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 165 bits (401), Expect = 4e-42 Identities = 85/110 (77%), Positives = 90/110 (81%) Frame = +3 Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182 PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYL Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 189 Query: 183 MKILTERGYSFTTTAEREIVRDIKRSCATSLLTSSRRWPPLHPAAPSRSL 332 MKIL ERGY+F+TTAEREIVRDIK L + L AA S SL Sbjct: 190 MKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQE---LQTAAQSSSL 236 Score = 126 bits (304), Expect = 2e-30 Identities = 61/86 (70%), Positives = 64/86 (74%) Frame = +2 Query: 251 QEKLCYVALDFEQEMATAAXXXXXXXXXXXPDGQVITIGNERFRCPEALF*PSFLGMEAC 430 +EKLCYVALDFEQE+ TAA PDGQVITIGNERFR PEALF PS LG+E Sbjct: 213 KEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENA 272 Query: 431 GIHETIYYSIMKCDVDIRKDLYANTV 508 GIHE Y SIMKCDVDIRKDLY N V Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVV 298 Score = 44.0 bits (99), Expect = 2e-05 Identities = 19/19 (100%), Positives = 19/19 (100%) Frame = +1 Query: 508 MSGGTTMYPGIADRMQKEI 564 MSGGTTMYPGIADRMQKEI Sbjct: 299 MSGGTTMYPGIADRMQKEI 317 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 106 bits (255), Expect = 2e-24 Identities = 46/87 (52%), Positives = 68/87 (78%) Frame = +3 Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182 PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL Sbjct: 135 PALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194 Query: 183 MKILTERGYSFTTTAEREIVRDIKRSC 263 L + G+ ++AE+EIVR+IK C Sbjct: 195 QLQLRKSGHELVSSAEKEIVREIKEKC 221 Score = 77.4 bits (182), Expect = 1e-15 Identities = 36/86 (41%), Positives = 48/86 (55%) Frame = +2 Query: 251 QEKLCYVALDFEQEMATAAXXXXXXXXXXXPDGQVITIGNERFRCPEALF*PSFLGMEAC 430 +EK CYVA DF E+ + PD Q IT+G E F PE LF P +G EA Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277 Query: 431 GIHETIYYSIMKCDVDIRKDLYANTV 508 G+H ++ SI+ D+D+R LY+N V Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIV 303 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 106 bits (255), Expect = 2e-24 Identities = 48/82 (58%), Positives = 64/82 (78%) Frame = +3 Query: 9 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 188 +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLIS 191 Query: 189 ILTERGYSFTTTAEREIVRDIK 254 +L +GY+F TA+ E VR++K Sbjct: 192 LLLRKGYAFNRTADFETVREMK 213 Score = 75.4 bits (177), Expect = 5e-15 Identities = 36/82 (43%), Positives = 48/82 (58%) Frame = +2 Query: 251 QEKLCYVALDFEQEMATAAXXXXXXXXXXXPDGQVITIGNERFRCPEALF*PSFLGMEAC 430 +EKLCYV+ D E + + PDG+VI +G+ER+ CPE LF P +G E Sbjct: 213 KEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQP 272 Query: 431 GIHETIYYSIMKCDVDIRKDLY 496 G+ E I+ +I DVDIRK LY Sbjct: 273 GLSEFIFDTIQAADVDIRKYLY 294 Score = 29.1 bits (62), Expect = 0.47 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +1 Query: 490 LVRQHRMSGGTTMYPGIADRMQKEI 564 L R +SGG++MY G+ R++KEI Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEI 317 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 66.1 bits (154), Expect = 3e-12 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 10/85 (11%) Frame = +3 Query: 9 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 164 +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGR Sbjct: 155 LYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGR 214 Query: 165 DLTDYLMKILTERGY--SFTTTAER 233 D+T ++ +L +R S TAER Sbjct: 215 DVTYFVQSLLRDRNEPDSSLKTAER 239 Score = 31.9 bits (69), Expect = 0.067 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +2 Query: 356 ITIGNERFRCPEALF*PSFLGME-ACGIHETIYYSIMKCDVDIRKDLYANTV 508 I +G ERF PE F P + + E + + +D+RK LY N V Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIV 331 Score = 25.0 bits (52), Expect = 7.7 Identities = 8/26 (30%), Positives = 18/26 (69%) Frame = +1 Query: 487 GLVRQHRMSGGTTMYPGIADRMQKEI 564 GL + +SGG+T++ +R+Q+++ Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDL 350 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 46.4 bits (105), Expect = 3e-06 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 9/65 (13%) Frame = +2 Query: 341 PDGQVITIGNERFRCPEALF*PSFLGMEAC---------GIHETIYYSIMKCDVDIRKDL 493 PDG G ERFR E LF PSF + G+HE +Y SI+ CD ++R L Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343 Query: 494 YANTV 508 N V Sbjct: 344 LNNIV 348 Score = 27.5 bits (58), Expect = 1.4 Identities = 8/19 (42%), Positives = 17/19 (89%) Frame = +1 Query: 508 MSGGTTMYPGIADRMQKEI 564 ++GGT++ PG+++R+Q E+ Sbjct: 349 VTGGTSLIPGLSERLQAEV 367 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 45.2 bits (102), Expect = 7e-06 Identities = 22/65 (33%), Positives = 39/65 (60%) Frame = +3 Query: 66 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 245 +V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216 Query: 246 DIKRS 260 +IK S Sbjct: 217 EIKES 221 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 42.7 bits (96), Expect = 4e-05 Identities = 22/66 (33%), Positives = 35/66 (53%) Frame = +3 Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182 P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +T +L Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHL 235 Query: 183 MKILTE 200 +L E Sbjct: 236 QNLLRE 241 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 39.5 bits (88), Expect = 3e-04 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +3 Query: 3 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 182 PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L Sbjct: 128 PATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187 Query: 183 MKILTERGY 209 + L ++ + Sbjct: 188 AQTLRDKNF 196 Score = 26.6 bits (56), Expect(2) = 0.032 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 341 PDGQVITIGNERFRCPEALF*P 406 PDG + G ER++ PE LF P Sbjct: 267 PDGSRMMFGAERYQIPEHLFVP 288 Score = 25.0 bits (52), Expect(2) = 0.032 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 431 GIHETIYYSIMKCDVDIRKDLYANTV 508 GI + I +CDVDIR L N + Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVI 351 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 38.7 bits (86), Expect = 6e-04 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = +3 Query: 3 PAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 176 P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSS 204 Query: 177 YLMKILTERGYSF 215 YL+K+ + SF Sbjct: 205 YLLKLFQIKYPSF 217 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 31.9 bits (69), Expect = 0.067 Identities = 17/45 (37%), Positives = 20/45 (44%) Frame = +1 Query: 7 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 141 P T+P P T PV P S P+ P P PS+ P PS Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080 Score = 27.1 bits (57), Expect = 1.9 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Frame = +1 Query: 4 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTRDTHSPTPS 141 PP +P P P VPP S P A + P P P+ + P PS Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243 Score = 26.6 bits (56), Expect = 2.5 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%) Frame = +1 Query: 4 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 141 PP PS +P VPPV P+ P P PS P PS Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137 Score = 25.8 bits (54), Expect = 4.4 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%) Frame = +1 Query: 4 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 141 PP +PS +P VPPV P+ P P PS P PS Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214 >SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 31.5 bits (68), Expect = 0.088 Identities = 13/64 (20%), Positives = 34/64 (53%) Frame = +3 Query: 24 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 203 +++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339 Query: 204 GYSF 215 + + Sbjct: 340 HFPY 343 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 28.3 bits (60), Expect = 0.82 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +1 Query: 28 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 132 PC+ + PPV+C TP P C + H P Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655 >SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual Length = 398 Score = 27.1 bits (57), Expect = 1.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 28 PCSRCTRPVVPPVSCWTPATVSPTPCPST 114 P SR T+P+ S +P VSP PST Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 27.1 bits (57), Expect = 1.9 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Frame = +1 Query: 7 PCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 141 P T S S P VPP S T + PT ST SP P+ Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224 Score = 25.8 bits (54), Expect = 4.4 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Frame = +1 Query: 7 PCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 141 P T S S P VPP S T + PT ST +P P+ Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167 Score = 25.4 bits (53), Expect = 5.8 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Frame = +1 Query: 13 TSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 141 T S S P VPP S T + PT ST SP P+ Sbjct: 237 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280 >SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 27.1 bits (57), Expect = 1.9 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = +1 Query: 4 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 111 PP P + T PV PV+ A P P P+ Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402 >SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1429 Score = 26.6 bits (56), Expect = 2.5 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = +3 Query: 279 TSSRRWPPLHPAAPSRSLXNFPMVRSSPSETKDSVAQRLSSNPRSWVWKLAVS 437 TS R PP + + SL N P RSS E D V + P++ K +V+ Sbjct: 47 TSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQTPSTKASVA 99 >SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1294 Score = 26.6 bits (56), Expect = 2.5 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = +2 Query: 458 IMKCDVDIRKDLYANTVCPVV 520 + C V++R ++YA +CP+V Sbjct: 478 LFACPVELRPEVYARMLCPLV 498 >SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 26.6 bits (56), Expect = 2.5 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%) Frame = -1 Query: 550 YGRRFQGTW---WYHRTYGVGV-QVLTDVHVALHDGVIYCLVDTASFH 419 YG + G W Y G Q L D+ ALHD +Y +VDT H Sbjct: 97 YGEAYHGYWPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDTVVNH 144 >SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 583 Score = 26.2 bits (55), Expect = 3.3 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +2 Query: 62 RYRAGLRRRCLPHRAHLRGIRTPPRHPASGLSRSRPHRLPHEDPHRARLLVHYHRRAGNR 241 RYR L R P LR + +PP PA+ SR P RL++ H++ R Sbjct: 84 RYRGSLLNRNSPS---LRSL-SPPATPATPRSRIEGESQTSAIPQTDRLILENHQQEFER 139 Query: 242 A 244 A Sbjct: 140 A 140 >SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1016 Score = 25.8 bits (54), Expect = 4.4 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 10 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 153 C +PS+ C + PV + T S TP P+T + +PTP+ T Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869 >SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|||Manual Length = 577 Score = 25.4 bits (53), Expect = 5.8 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +3 Query: 147 LDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKRSCATSLLTSSRRWP 299 LD+ R L K +T + SFT +EI IK T+ TS + P Sbjct: 322 LDMTDRFLPRLRTKHITPKLLSFTPYTAQEISTIIKARLKTAATTSEKNNP 372 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 25.4 bits (53), Expect = 5.8 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Frame = +1 Query: 22 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWT*PV 162 S+ S T P PP + T PA SP P P +T H PT S PV Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948 >SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosaccharomyces pombe|chr 2|||Manual Length = 663 Score = 25.0 bits (52), Expect = 7.7 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +1 Query: 25 KPCSRCTRPVVPPVSCWTPATVSPTPCP 108 KP S+ TRP +P + T +V P P P Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,582,431 Number of Sequences: 5004 Number of extensions: 54893 Number of successful extensions: 245 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 239 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 238029836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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