Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1108X
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             123   1e-30
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.7  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  123 bits (296), Expect = 1e-30
 Identities = 59/73 (80%), Positives = 59/73 (80%)
 Frame = +2

Query: 290 EMATAAXXXXXXXXXXXPDGQVITIGNERFRCPEALF*PSFLGMEACGIHETIYYSIMKC 469
           EMATAA           PDGQVITIGNERFRCPEALF PSFLGMEACGIHET Y SIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 470 DVDIRKDLYANTV 508
           DVDIRKDLYANTV
Sbjct: 61  DVDIRKDLYANTV 73



 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +1

Query: 508 MSGGTTMYPGIADRMQKEI 564
           +SGGTTMYPGIADRMQKEI
Sbjct: 74  LSGGTTMYPGIADRMQKEI 92


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 445 NILLHHEVRRGHP*GLVRQHRMSGGTTMYPG 537
           N  L+ +V+ GH    V+QHR S  +T   G
Sbjct: 264 NRQLNSDVQPGHGSPPVKQHRSSSASTTCSG 294


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +2

Query: 125 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 223
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 98  VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 6
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 301 GGHLLLEVKSDVAQLLLMSRTI 236
           GG ++  + S +  LLL+ RT+
Sbjct: 8   GGGMVSAILSSIVLLLLLGRTV 29


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 38  AVRVRSYHRYRAGLRRRCLPHRAHLRGIRTPPRHPASGLSRSRP 169
           ++  +++HR        C P   +L  I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 329 TSRGSCWMQRWPSPARSQERRSTASLDV 246
           T+RG     RW +P     R+ T++ DV
Sbjct: 794 TTRGGKIPVRWTAPEAIAFRKFTSASDV 821


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 465 SATWTSVRTCTPTPYVRWY 521
           S +   V    PTP  RWY
Sbjct: 254 STSLVCVAQACPTPEYRWY 272


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 465 SATWTSVRTCTPTPYVRWY 521
           S +   V    PTP  RWY
Sbjct: 254 STSLVCVAQACPTPEYRWY 272


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 93  SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 191
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,043
Number of Sequences: 438
Number of extensions: 4254
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)