Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1107X
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    73   2e-14
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    35   0.009
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    27   1.9  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    25   5.8  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   5.8  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   7.6  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 33/56 (58%), Positives = 41/56 (73%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           KAR V EN  YLGIDC+  GSNDM+   VI+ L  KKQQ+ LATQL +M+LK+ D+
Sbjct: 480 KARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDI 535


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 20  ENNPYLGID--CMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           EN   +G+D  C + G+ D K   + + L +KK  I LAT+ V  +L +  V
Sbjct: 474 ENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQV 525


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/54 (20%), Positives = 29/54 (53%)
 Frame = +2

Query: 20  ENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
           + N  +G+D       DM+A  ++E+L  K+  ++  ++  +++L++  +   A
Sbjct: 467 DGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTILKAA 520


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 83  NVIESLHSKKQQIALATQLVKMILKIGDV 169
           NV++ L      I LA +  KMI+KI D+
Sbjct: 495 NVLQPLLVNISAIQLAAETTKMIMKIDDI 523


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 349 NAITFDHRVHSIIETTMRTPTAHFLSFRHSAKSITKDFCSTKPQLSNYN 203
           NA+   H+   +I+T +    A    FR+S K +TK +  T  Q S ++
Sbjct: 471 NAMRLIHK--RVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQTSTHD 517


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -2

Query: 319 SIIETTMRTPTAHFLSFRHSAKSITKDFCSTKPQLSNYNMHLVDG 185
           S+++ T+   +   ++     + +     ST P   + NM LV+G
Sbjct: 248 SVLQNTIVNVSGQLIAVNDQLQQLRSGKASTSPSTKDTNMRLVEG 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,906
Number of Sequences: 5004
Number of extensions: 42535
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)