BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1107X (560 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 73 2e-14 SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 35 0.009 SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 27 1.9 SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 25 5.8 SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 5.8 SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 25 7.6 >SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit Cct5|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 73.3 bits (172), Expect = 2e-14 Identities = 33/56 (58%), Positives = 41/56 (73%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 KAR V EN YLGIDC+ GSNDM+ VI+ L KKQQ+ LATQL +M+LK+ D+ Sbjct: 480 KARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDI 535 >SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit Cct8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 546 Score = 34.7 bits (76), Expect = 0.009 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +2 Query: 20 ENNPYLGID--CMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 EN +G+D C + G+ D K + + L +KK I LAT+ V +L + V Sbjct: 474 ENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQV 525 >SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit Cct2|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 27.1 bits (57), Expect = 1.9 Identities = 11/54 (20%), Positives = 29/54 (53%) Frame = +2 Query: 20 ENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181 + N +G+D DM+A ++E+L K+ ++ ++ +++L++ + A Sbjct: 467 DGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTILKAA 520 >SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual Length = 527 Score = 25.4 bits (53), Expect = 5.8 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 83 NVIESLHSKKQQIALATQLVKMILKIGDV 169 NV++ L I LA + KMI+KI D+ Sbjct: 495 NVLQPLLVNISAIQLAAETTKMIMKIDDI 523 >SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 540 Score = 25.4 bits (53), Expect = 5.8 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -2 Query: 349 NAITFDHRVHSIIETTMRTPTAHFLSFRHSAKSITKDFCSTKPQLSNYN 203 NA+ H+ +I+T + A FR+S K +TK + T Q S ++ Sbjct: 471 NAMRLIHK--RVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQTSTHD 517 >SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 474 Score = 25.0 bits (52), Expect = 7.6 Identities = 10/45 (22%), Positives = 21/45 (46%) Frame = -2 Query: 319 SIIETTMRTPTAHFLSFRHSAKSITKDFCSTKPQLSNYNMHLVDG 185 S+++ T+ + ++ + + ST P + NM LV+G Sbjct: 248 SVLQNTIVNVSGQLIAVNDQLQQLRSGKASTSPSTKDTNMRLVEG 292 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,266,906 Number of Sequences: 5004 Number of extensions: 42535 Number of successful extensions: 97 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 97 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 236012634 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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