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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1107X
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516...    79   2e-15
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118...    30   1.1  
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832...    30   1.1  
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880...    29   2.5  
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     28   4.4  
10_08_0620 - 19321612-19323237                                         28   5.9  
12_01_0431 + 3396661-3397283,3399679-3399775                           27   7.7  
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648...    27   7.7  

>06_03_0477 -
           21250811-21250981,21251261-21251374,21251447-21251613,
           21252051-21252153,21252315-21252367,21252438-21252570,
           21252835-21253183,21253685-21254003,21254519-21254717
          Length = 535

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 38/61 (62%), Positives = 47/61 (77%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
           K++QV E+NP+ GIDC   G+N MK  NV E+L  K+QQI LATQ+VKMILKI DV SP+
Sbjct: 474 KSQQVKESNPHCGIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533

Query: 182 D 184
           D
Sbjct: 534 D 534


>06_03_0353 +
           19810945-19810975,19811308-19811369,19811741-19811813,
           19813292-19813359,19813496-19813565,19813908-19813976,
           19814065-19814136,19814247-19814320,19814420-19814697,
           19814804-19815188,19815268-19815393,19815583-19815687,
           19815986-19815994,19817040-19817114,19817202-19817390
          Length = 561

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 26  NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175
           N ++GID  S    DMK   + +S   K Q    A +   M+L+I D+ S
Sbjct: 480 NAWVGIDGRSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVS 529


>02_02_0253 -
           8325437-8325628,8325705-8325779,8325933-8326037,
           8326249-8326374,8326451-8326835,8326931-8327208,
           8327294-8327367,8327476-8327547,8327637-8327705,
           8340132-8340201,8340806-8340873,8341571-8341643,
           8341807-8341868,8342168-8342198
          Length = 559

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 26  NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175
           N ++GID  S    DMK   + +S   K Q    A +   M+L+I D+ S
Sbjct: 477 NAWVGIDGSSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVS 526


>03_05_0339 +
           23287620-23287676,23287784-23287849,23287937-23288048,
           23288240-23288368,23288795-23288866,23289245-23289360,
           23289494-23289570,23289788-23290273,23290373-23290688,
           23290769-23290915
          Length = 525

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 20  ENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           + N   GID ++    DM+   + E+   K+  +  AT+  +MIL++ ++
Sbjct: 464 KENCTAGIDVITGSVGDMQKRGISEAFKVKQAILLSATEAAEMILRVDEI 513


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 17  AENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           A+     GI+       ++   NV++ L      I LA + V+MILKI D+
Sbjct: 496 AKGEKNAGINVRKGQITNILEENVVQPLLVSTSAITLACECVRMILKIDDI 546


>10_08_0620 - 19321612-19323237
          Length = 541

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 17  AENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           A+     GI+       ++   NV++ L      + LA + V+MILKI D+
Sbjct: 487 AKGEKNAGINVRKGRITNILEENVVQPLLVSTSAVTLACECVRMILKIDDI 537


>12_01_0431 + 3396661-3397283,3399679-3399775
          Length = 239

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 440 YSQWLESLSSKAKEYRHH 493
           Y  W  SLS+K+ E RHH
Sbjct: 168 YDAWANSLSTKSTEARHH 185


>05_07_0067 +
           27463703-27463705,27464309-27464365,27464779-27464844,
           27464985-27465096,27465281-27465409,27466076-27466191,
           27466364-27466440,27466678-27467163,27467255-27467570,
           27467618-27467797
          Length = 513

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 68  DMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           DM+ + + ES  +K+  +  AT+  +MIL++ ++
Sbjct: 468 DMEKLGISESFKAKQAVLMSATEAAEMILRVDEI 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,537
Number of Sequences: 37544
Number of extensions: 255082
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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