Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1107X
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 79 2e-15
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 30 1.1
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 30 1.1
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 29 2.5
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 28 4.4
10_08_0620 - 19321612-19323237 28 5.9
12_01_0431 + 3396661-3397283,3399679-3399775 27 7.7
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 27 7.7
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/61 (62%), Positives = 47/61 (77%)
Frame = +2
Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
K++QV E+NP+ GIDC G+N MK NV E+L K+QQI LATQ+VKMILKI DV SP+
Sbjct: 474 KSQQVKESNPHCGIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533
Query: 182 D 184
D
Sbjct: 534 D 534
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 26 NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175
N ++GID S DMK + +S K Q A + M+L+I D+ S
Sbjct: 480 NAWVGIDGRSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVS 529
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 26 NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175
N ++GID S DMK + +S K Q A + M+L+I D+ S
Sbjct: 477 NAWVGIDGSSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVS 526
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 20 ENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
+ N GID ++ DM+ + E+ K+ + AT+ +MIL++ ++
Sbjct: 464 KENCTAGIDVITGSVGDMQKRGISEAFKVKQAILLSATEAAEMILRVDEI 513
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 17 AENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
A+ GI+ ++ NV++ L I LA + V+MILKI D+
Sbjct: 496 AKGEKNAGINVRKGQITNILEENVVQPLLVSTSAITLACECVRMILKIDDI 546
>10_08_0620 - 19321612-19323237
Length = 541
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 17 AENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
A+ GI+ ++ NV++ L + LA + V+MILKI D+
Sbjct: 487 AKGEKNAGINVRKGRITNILEENVVQPLLVSTSAVTLACECVRMILKIDDI 537
>12_01_0431 + 3396661-3397283,3399679-3399775
Length = 239
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 440 YSQWLESLSSKAKEYRHH 493
Y W SLS+K+ E RHH
Sbjct: 168 YDAWANSLSTKSTEARHH 185
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 68 DMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
DM+ + + ES +K+ + AT+ +MIL++ ++
Sbjct: 468 DMEKLGISESFKAKQAVLMSATEAAEMILRVDEI 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,537
Number of Sequences: 37544
Number of extensions: 255082
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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