BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1107X (560 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 79 2e-15 06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 30 1.1 02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 30 1.1 03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 29 2.5 02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 28 4.4 10_08_0620 - 19321612-19323237 28 5.9 12_01_0431 + 3396661-3397283,3399679-3399775 27 7.7 05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 27 7.7 >06_03_0477 - 21250811-21250981,21251261-21251374,21251447-21251613, 21252051-21252153,21252315-21252367,21252438-21252570, 21252835-21253183,21253685-21254003,21254519-21254717 Length = 535 Score = 79.4 bits (187), Expect = 2e-15 Identities = 38/61 (62%), Positives = 47/61 (77%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181 K++QV E+NP+ GIDC G+N MK NV E+L K+QQI LATQ+VKMILKI DV SP+ Sbjct: 474 KSQQVKESNPHCGIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 533 Query: 182 D 184 D Sbjct: 534 D 534 >06_03_0353 + 19810945-19810975,19811308-19811369,19811741-19811813, 19813292-19813359,19813496-19813565,19813908-19813976, 19814065-19814136,19814247-19814320,19814420-19814697, 19814804-19815188,19815268-19815393,19815583-19815687, 19815986-19815994,19817040-19817114,19817202-19817390 Length = 561 Score = 30.3 bits (65), Expect = 1.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +2 Query: 26 NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175 N ++GID S DMK + +S K Q A + M+L+I D+ S Sbjct: 480 NAWVGIDGRSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVS 529 >02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037, 8326249-8326374,8326451-8326835,8326931-8327208, 8327294-8327367,8327476-8327547,8327637-8327705, 8340132-8340201,8340806-8340873,8341571-8341643, 8341807-8341868,8342168-8342198 Length = 559 Score = 30.3 bits (65), Expect = 1.1 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +2 Query: 26 NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175 N ++GID S DMK + +S K Q A + M+L+I D+ S Sbjct: 477 NAWVGIDGSSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVS 526 >03_05_0339 + 23287620-23287676,23287784-23287849,23287937-23288048, 23288240-23288368,23288795-23288866,23289245-23289360, 23289494-23289570,23289788-23290273,23290373-23290688, 23290769-23290915 Length = 525 Score = 29.1 bits (62), Expect = 2.5 Identities = 13/50 (26%), Positives = 27/50 (54%) Frame = +2 Query: 20 ENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 + N GID ++ DM+ + E+ K+ + AT+ +MIL++ ++ Sbjct: 464 KENCTAGIDVITGSVGDMQKRGISEAFKVKQAILLSATEAAEMILRVDEI 513 >02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 Length = 550 Score = 28.3 bits (60), Expect = 4.4 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +2 Query: 17 AENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 A+ GI+ ++ NV++ L I LA + V+MILKI D+ Sbjct: 496 AKGEKNAGINVRKGQITNILEENVVQPLLVSTSAITLACECVRMILKIDDI 546 >10_08_0620 - 19321612-19323237 Length = 541 Score = 27.9 bits (59), Expect = 5.9 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +2 Query: 17 AENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 A+ GI+ ++ NV++ L + LA + V+MILKI D+ Sbjct: 487 AKGEKNAGINVRKGRITNILEENVVQPLLVSTSAVTLACECVRMILKIDDI 537 >12_01_0431 + 3396661-3397283,3399679-3399775 Length = 239 Score = 27.5 bits (58), Expect = 7.7 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +2 Query: 440 YSQWLESLSSKAKEYRHH 493 Y W SLS+K+ E RHH Sbjct: 168 YDAWANSLSTKSTEARHH 185 >05_07_0067 + 27463703-27463705,27464309-27464365,27464779-27464844, 27464985-27465096,27465281-27465409,27466076-27466191, 27466364-27466440,27466678-27467163,27467255-27467570, 27467618-27467797 Length = 513 Score = 27.5 bits (58), Expect = 7.7 Identities = 10/34 (29%), Positives = 22/34 (64%) Frame = +2 Query: 68 DMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 DM+ + + ES +K+ + AT+ +MIL++ ++ Sbjct: 468 DMEKLGISESFKAKQAVLMSATEAAEMILRVDEI 501 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,061,537 Number of Sequences: 37544 Number of extensions: 255082 Number of successful extensions: 473 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 473 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1281410928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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