Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1107X
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  38   0.007
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   29   3.4  
SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)            27   7.9  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSN 67
           K+RQVAE NP LG+DCM  G N
Sbjct: 476 KSRQVAEKNPRLGVDCMDSGIN 497


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
           +A+  AE N   GID  S    DM+ + V ++   K Q    A +  K +L +   RSP 
Sbjct: 256 RAKHAAEGNTSWGIDGESGQIVDMQELGVWDTYAVKAQTFKTALE-KKSLLDVDHYRSPC 314

Query: 182 DSID*MH 202
             +D  H
Sbjct: 315 ALLDVHH 321


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           +A      N Y G++ ++    DM+ + + ES   K+Q +  A +  +MI+++ ++
Sbjct: 463 RAAHTQGKNTY-GLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMIVRVDNI 517


>SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           +A      N Y G++ ++    DM+ + + ES   K+Q +  A +  +MI+++ ++
Sbjct: 21  RAAHTQGKNTY-GLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMIVRVDNI 75


>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 108 RNSR*LWPPNSSR*YSRLVMSGHLQTPST 194
           RNS   WPP + + Y R V +    +PST
Sbjct: 636 RNSNLTWPPPTDKPYERSVTTNSSSSPST 664


>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
          Length = 206

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 2   KARQVAENNPYLGID 46
           K+RQVAE NP LG+D
Sbjct: 191 KSRQVAEKNPGLGVD 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,776,046
Number of Sequences: 59808
Number of extensions: 312327
Number of successful extensions: 869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)