BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1107X (560 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 38 0.007 SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1 SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 29 3.4 SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4 SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5 SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05) 27 7.9 >SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) Length = 505 Score = 37.5 bits (83), Expect = 0.007 Identities = 15/22 (68%), Positives = 17/22 (77%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSN 67 K+RQVAE NP LG+DCM G N Sbjct: 476 KSRQVAEKNPRLGVDCMDSGIN 497 >SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 546 Score = 30.3 bits (65), Expect = 1.1 Identities = 21/67 (31%), Positives = 31/67 (46%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181 +A+ AE N GID S DM+ + V ++ K Q A + K +L + RSP Sbjct: 256 RAKHAAEGNTSWGIDGESGQIVDMQELGVWDTYAVKAQTFKTALE-KKSLLDVDHYRSPC 314 Query: 182 DSID*MH 202 +D H Sbjct: 315 ALLDVHH 321 >SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) Length = 531 Score = 28.7 bits (61), Expect = 3.4 Identities = 13/56 (23%), Positives = 30/56 (53%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 +A N Y G++ ++ DM+ + + ES K+Q + A + +MI+++ ++ Sbjct: 463 RAAHTQGKNTY-GLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMIVRVDNI 517 >SB_36771| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 93 Score = 28.7 bits (61), Expect = 3.4 Identities = 13/56 (23%), Positives = 30/56 (53%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 +A N Y G++ ++ DM+ + + ES K+Q + A + +MI+++ ++ Sbjct: 21 RAAHTQGKNTY-GLNMVNGTVGDMRDLGITESYQVKRQVLLSAAEAAEMIVRVDNI 75 >SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 819 Score = 28.3 bits (60), Expect = 4.5 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 108 RNSR*LWPPNSSR*YSRLVMSGHLQTPST 194 RNS WPP + + Y R V + +PST Sbjct: 636 RNSNLTWPPPTDKPYERSVTTNSSSSPST 664 >SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05) Length = 206 Score = 27.5 bits (58), Expect = 7.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = +2 Query: 2 KARQVAENNPYLGID 46 K+RQVAE NP LG+D Sbjct: 191 KSRQVAEKNPGLGVD 205 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,776,046 Number of Sequences: 59808 Number of extensions: 312327 Number of successful extensions: 869 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 868 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1312894764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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