Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1107X
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical pr... 72 3e-13
Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical pr... 72 3e-13
Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical pr... 72 3e-13
U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein. 72 3e-13
Z92825-7|CAB07317.1| 487|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z81041-15|CAB02792.1| 487|Caenorhabditis elegans Hypothetical p... 28 4.0
Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical p... 27 7.0
U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein. 27 7.0
AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical ... 27 7.0
AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical ... 27 7.0
AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical ... 27 7.0
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 27 9.2
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 9.2
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 9.2
>Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
KA+Q+ LGID + G+NDMK VIE+L SK++QI+LATQ+V+MILKI DVR P
Sbjct: 477 KAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDVRVPD 536
Query: 182 D 184
D
Sbjct: 537 D 537
>Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
KA+Q+ LGID + G+NDMK VIE+L SK++QI+LATQ+V+MILKI DVR P
Sbjct: 477 KAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDVRVPD 536
Query: 182 D 184
D
Sbjct: 537 D 537
>Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical
protein C07G2.3b protein.
Length = 336
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
KA+Q+ LGID + G+NDMK VIE+L SK++QI+LATQ+V+MILKI DVR P
Sbjct: 271 KAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDVRVPD 330
Query: 182 D 184
D
Sbjct: 331 D 331
>U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein.
Length = 542
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
KA+Q+ LGID + G+NDMK VIE+L SK++QI+LATQ+V+MILKI DVR P
Sbjct: 477 KAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDVRVPD 536
Query: 182 D 184
D
Sbjct: 537 D 537
>Z92825-7|CAB07317.1| 487|Caenorhabditis elegans Hypothetical
protein C27A7.6 protein.
Length = 487
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 165 SPILSIILTSWVARAICCFFECNDSITFIAFMS 67
S I + W+ A+CCF ++++ +I+F S
Sbjct: 26 SVIYKVYPARWLVLAVCCFLALSNAMQWISFSS 58
>Z81041-15|CAB02792.1| 487|Caenorhabditis elegans Hypothetical
protein C27A7.6 protein.
Length = 487
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 165 SPILSIILTSWVARAICCFFECNDSITFIAFMS 67
S I + W+ A+CCF ++++ +I+F S
Sbjct: 26 SVIYKVYPARWLVLAVCCFLALSNAMQWISFSS 58
>Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical
protein T22A3.5 protein.
Length = 790
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 107 KKQQIALATQLVKMILKIGDVRSPADSI 190
KK+ I +QL K+IL +GD++ A+++
Sbjct: 545 KKEMIGNGSQLSKVILILGDIQEEAEAV 572
>Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 35 LGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
+GID D+ + VIES + K ++ A + + IL++ D+
Sbjct: 470 MGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDI 514
>U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein.
Length = 529
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 35 LGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
+GID D+ + VIES + K ++ A + + IL++ D+
Sbjct: 470 MGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDI 514
>AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 35 LGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
+GID D+ + VIES + K ++ A + + IL++ D+
Sbjct: 470 MGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDI 514
>AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical
protein cTel55X.1a protein.
Length = 222
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 503 WINHGVYTLLLWNSNFPAIVSNHSHP*TSAV 411
W NHG++TL ++ + NH+ TSA+
Sbjct: 117 WFNHGLHTLPAITAHLDLAIYNHTSFSTSAI 147
>AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical
protein cTel55X.1b protein.
Length = 233
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 503 WINHGVYTLLLWNSNFPAIVSNHSHP*TSAV 411
W NHG++TL ++ + NH+ TSA+
Sbjct: 117 WFNHGLHTLPAITAHLDLAIYNHTSFSTSAI 147
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 168 TSPILSIILTSWVARAICCFFECNDSITFIAFMS 67
+ P LSI+LT V +AIC F C + F A +S
Sbjct: 452 SDPRLSILLTPHVEKAICSMF-CVNVADFSALIS 484
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 384 IKIALSCSTCTIMQLHLIIEYTQLLKQ 304
I + LSCS C I + H ++E + K+
Sbjct: 471 IGLPLSCSECNIEEFHSVVEIEEHFKE 497
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 384 IKIALSCSTCTIMQLHLIIEYTQLLKQ 304
I + LSCS C I + H ++E + K+
Sbjct: 471 IGLPLSCSECNIEEFHSVVEIEEHFKE 497
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,563,992
Number of Sequences: 27780
Number of extensions: 243940
Number of successful extensions: 549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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