BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1107X (560 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 74 6e-14 At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 74 6e-14 At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 36 0.024 At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 30 0.92 At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 29 1.6 At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 29 2.1 At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 29 2.8 >At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative identical to SWISS-PROT:O04450- T-complex protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis thaliana]; strong similarity to SP|P54411 T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 459 Score = 74.1 bits (174), Expect = 6e-14 Identities = 35/61 (57%), Positives = 46/61 (75%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181 K++Q+ EN P+ GIDC G+NDM+ NV E+L K+QQI LATQ+VKMILKI DV S + Sbjct: 398 KSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNS 457 Query: 182 D 184 + Sbjct: 458 E 458 >At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative identical to SWISS-PROT:O04450- T-complex protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis thaliana]; strong similarity to SP|P54411 T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 535 Score = 74.1 bits (174), Expect = 6e-14 Identities = 35/61 (57%), Positives = 46/61 (75%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181 K++Q+ EN P+ GIDC G+NDM+ NV E+L K+QQI LATQ+VKMILKI DV S + Sbjct: 474 KSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNS 533 Query: 182 D 184 + Sbjct: 534 E 534 >At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative similar to chaperonin containing TCP-1 (CCT) epsilon subunit [Tetrahymena pyriformis] GI:15824416, SP|P80316 T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon) {Mus musculus} Length = 142 Score = 35.5 bits (78), Expect = 0.024 Identities = 27/61 (44%), Positives = 35/61 (57%) Frame = +2 Query: 2 KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181 K++Q+ EN P+ GIDC ND QQI LATQ+VK I+KI DV SP+ Sbjct: 101 KSQQIKENIPFYGIDC-----ND--------------QQIVLATQVVK-IIKIDDVISPS 140 Query: 182 D 184 + Sbjct: 141 E 141 >At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-PROT:P50991- T-complex protein 1, delta subunit (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 536 Score = 30.3 bits (65), Expect = 0.92 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +2 Query: 83 NVIESLHSKKQQIALATQLVKMILKIGDV 169 NV++ L I LAT+ V+MILKI D+ Sbjct: 504 NVVQPLLVSTSAITLATECVRMILKIDDI 532 >At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-PROT:P50143- T-complex protein 1, gamma subunit (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 555 Score = 29.5 bits (63), Expect = 1.6 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +2 Query: 26 NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175 N + GID + DMK + +S + K Q A + M+L+I D+ S Sbjct: 475 NAWTGIDGNTGAIADMKESKIWDSYNVKAQTFKTAIEAACMLLRIDDIVS 524 >At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-containing protein low similarity to NUB1 (NEDD8-interacting protein) [Homo sapiens] GI:13383476; contains Pfam profile PF00627: UBA/TS-N domain Length = 562 Score = 29.1 bits (62), Expect = 2.1 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = +2 Query: 38 GIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIG 163 G+ G ND KA+N ++S H+K Q+ + + + +++ +G Sbjct: 256 GVVAYHTGQND-KALNALKSAHAKFLQLQIPDETLSLVMGMG 296 >At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-PROT:P78371- T-complex protein 1, beta subunit (TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 527 Score = 28.7 bits (61), Expect = 2.8 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +2 Query: 38 GIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169 GID ++ DM+ + E+ K+ + AT+ +MIL++ ++ Sbjct: 472 GIDVITGAVGDMEERGIYEAFKVKQAVLLSATEASEMILRVDEI 515 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,647,680 Number of Sequences: 28952 Number of extensions: 217277 Number of successful extensions: 452 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 441 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 452 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1072696904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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