Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1107X
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    74   6e-14
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    74   6e-14
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu...    36   0.024
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    30   0.92 
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P...    29   1.6  
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-...    29   2.1  
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P...    29   2.8  

>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
           K++Q+ EN P+ GIDC   G+NDM+  NV E+L  K+QQI LATQ+VKMILKI DV S +
Sbjct: 398 KSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNS 457

Query: 182 D 184
           +
Sbjct: 458 E 458


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
           K++Q+ EN P+ GIDC   G+NDM+  NV E+L  K+QQI LATQ+VKMILKI DV S +
Sbjct: 474 KSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNS 533

Query: 182 D 184
           +
Sbjct: 534 E 534


>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative similar to chaperonin containing TCP-1 (CCT)
           epsilon subunit [Tetrahymena pyriformis] GI:15824416,
           SP|P80316 T-complex protein 1, epsilon subunit
           (TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
          Length = 142

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 27/61 (44%), Positives = 35/61 (57%)
 Frame = +2

Query: 2   KARQVAENNPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRSPA 181
           K++Q+ EN P+ GIDC     ND              QQI LATQ+VK I+KI DV SP+
Sbjct: 101 KSQQIKENIPFYGIDC-----ND--------------QQIVLATQVVK-IIKIDDVISPS 140

Query: 182 D 184
           +
Sbjct: 141 E 141


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 83  NVIESLHSKKQQIALATQLVKMILKIGDV 169
           NV++ L      I LAT+ V+MILKI D+
Sbjct: 504 NVVQPLLVSTSAITLATECVRMILKIDDI 532


>At5g26360.1 68418.m03151 chaperonin, putative similar to
           SWISS-PROT:P50143- T-complex protein 1, gamma subunit
           (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 555

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 26  NPYLGIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDVRS 175
           N + GID  +    DMK   + +S + K Q    A +   M+L+I D+ S
Sbjct: 475 NAWTGIDGNTGAIADMKESKIWDSYNVKAQTFKTAIEAACMLLRIDDIVS 524


>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
           domain-containing protein low similarity to NUB1
           (NEDD8-interacting protein) [Homo sapiens] GI:13383476;
           contains Pfam profile PF00627: UBA/TS-N domain
          Length = 562

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 38  GIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIG 163
           G+     G ND KA+N ++S H+K  Q+ +  + + +++ +G
Sbjct: 256 GVVAYHTGQND-KALNALKSAHAKFLQLQIPDETLSLVMGMG 296


>At5g20890.1 68418.m02481 chaperonin, putative similar to
           SWISS-PROT:P78371- T-complex protein 1, beta subunit
           (TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 527

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 38  GIDCMSKGSNDMKAMNVIESLHSKKQQIALATQLVKMILKIGDV 169
           GID ++    DM+   + E+   K+  +  AT+  +MIL++ ++
Sbjct: 472 GIDVITGAVGDMEERGIYEAFKVKQAVLLSATEASEMILRVDEI 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,647,680
Number of Sequences: 28952
Number of extensions: 217277
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)