Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1106
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    68   1e-12
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    30   0.30 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   0.70 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.6  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   3.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.9  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   4.9  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   6.5  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.6  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   8.6  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 35/75 (46%), Positives = 43/75 (57%)
 Frame = +2

Query: 23  FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTIFRL 202
           F RYVE GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 203 KYAFTAPTRLVRKAW 247
           K    A + +V K W
Sbjct: 64  KLPRGARSGIVAKKW 78



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +1

Query: 268 KWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSLK 408
           KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K+LK
Sbjct: 86  KWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 115
           + ++PG+VAL+  G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 115
           + ++PG+VALV  G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -1

Query: 474 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 328
           HF    F+  +   G +  S H   LE+GS     LN  S     I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +2

Query: 125 LVDGPGSGVPRQQIRLNQLHLTIFRLKYAFTAPTRLVRKAWTDVNSMKNGQKVNGPRS*R 304
           L  GP +    QQ +L+ +     R   A T P   + K W D ++ +N   VN  R+  
Sbjct: 191 LRSGPANSTWEQQQKLDHVRRIYQR---AITTPIHNIEKLWRDYDAFEN--SVN--RATA 243

Query: 305 TKRSAHK*QITIGSS*QLHELRGTVPGL 388
            K  A K  + + +   + EL     GL
Sbjct: 244 RKFVAEKSPVYMAARAAMRELSNLTEGL 271


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +1

Query: 235 EESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVK 414
           E +    +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K +  +
Sbjct: 707 ERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRE 764

Query: 415 AARA 426
           +A A
Sbjct: 765 SAHA 768


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 41  PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 166
           PG V ++  G  +GK V V+  ++ T  +V GP   +GVP +++
Sbjct: 54  PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 211 VHSPYSSCEESVDRCKLNEKWTESQWA 291
           VH PY+S E++     +N+K  E  W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 172 KPTPSHNIPPQIRVHSPYSSCEESVDRCKLN 264
           KP P+  + PQ  ++SP  S E      KL+
Sbjct: 377 KPKPAKELSPQATLNSPIQSAEAGNVELKLH 407


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 205 IRVHSPYSSCEESVDRCKLNEKWTESQWAQKLANKEKRAQMTD 333
           + + S  SS E  +DR K+  +  ES W  +L   E +    D
Sbjct: 182 LNLQSHVSSKESELDRFKIKLETEESNWKVRLQVLESKLATQD 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,136
Number of Sequences: 5004
Number of extensions: 45004
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)