Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1106
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    59   2e-09
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    57   9e-09
03_05_0161 + 21400580-21401695                                         30   1.6  
04_04_0387 + 24869594-24871480                                         29   3.8  
07_03_0020 + 12512841-12512879,12512964-12513009,12513830-125139...    28   5.0  
06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253     28   6.6  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 33/62 (53%), Positives = 41/62 (66%)
 Frame = +2

Query: 17  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTIF 196
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58

Query: 197 RL 202
           ++
Sbjct: 59  KI 60



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/61 (34%), Positives = 35/61 (57%)
 Frame = +1

Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 417
           ++++   +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  A
Sbjct: 73  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132

Query: 418 A 420
           A
Sbjct: 133 A 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +2

Query: 20  PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTIFR 199
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 200 L 202
           +
Sbjct: 73  I 73



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +1

Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 369
           ++++   +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 180 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 85
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +1

Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 417
           E V+    +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ 
Sbjct: 493 EEVESDDESEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRM 548

Query: 418 ARAGTFGKK 444
           ARA T   K
Sbjct: 549 ARANTMVMK 557


>07_03_0020 +
           12512841-12512879,12512964-12513009,12513830-12513954,
           12514289-12514319,12514427-12514497,12514644-12514692,
           12514780-12514880,12515594-12515722,12516076-12516120
          Length = 211

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/65 (35%), Positives = 28/65 (43%)
 Frame = +1

Query: 232 CEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 411
           CE+ VD C  N K        K   KE   +    + F  T     R++A    FKSLKV
Sbjct: 50  CEQDVDPC--NWKGVRCDSHTKRRGKEDTCRSAGINYF--TEDIAARSQAVARQFKSLKV 105

Query: 412 KAARA 426
           KA  A
Sbjct: 106 KAVVA 110


>06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253
          Length = 200

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +1

Query: 163 DPLKPTPSHNIPPQIR--VHSPYS-SCEESVDRCKLNEKWTESQWAQK 297
           DP++  P  N  P+IR  V   Y+ S     D C    KW   +W +K
Sbjct: 79  DPVEWKPIENYQPEIRDQVKRIYALSGPTQPDFCTFPRKWQSGEWRKK 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,133,999
Number of Sequences: 37544
Number of extensions: 313278
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)