BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1106 (606 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 59 2e-09 04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 57 9e-09 03_05_0161 + 21400580-21401695 30 1.6 04_04_0387 + 24869594-24871480 29 3.8 07_03_0020 + 12512841-12512879,12512964-12513009,12513830-125139... 28 5.0 06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253 28 6.6 >02_04_0659 - 24797477-24797533,24797614-24797726,24797814-24797943, 24798727-24798828,24798951-24798953 Length = 134 Score = 59.3 bits (137), Expect = 2e-09 Identities = 33/62 (53%), Positives = 41/62 (66%) Frame = +2 Query: 17 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTIF 196 MPF R+VE GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58 Query: 197 RL 202 ++ Sbjct: 59 KI 60 Score = 49.6 bits (113), Expect = 2e-06 Identities = 21/61 (34%), Positives = 35/61 (57%) Frame = +1 Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 417 ++++ + KW S W +KL +++RA + D+DRFK+ A++KR A LK A Sbjct: 73 KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132 Query: 418 A 420 A Sbjct: 133 A 133 >04_04_0506 - 25723809-25724299,25725082-25725237,25725316-25725445, 25726484-25726585,25726630-25726671 Length = 306 Score = 57.2 bits (132), Expect = 9e-09 Identities = 32/61 (52%), Positives = 40/61 (65%) Frame = +2 Query: 20 PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTIFR 199 PF R+VE GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT + Sbjct: 15 PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72 Query: 200 L 202 + Sbjct: 73 I 73 Score = 44.4 bits (100), Expect = 7e-05 Identities = 15/44 (34%), Positives = 29/44 (65%) Frame = +1 Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 369 ++++ + KW S W +KL +++RA + D+DRFK+ A++K Sbjct: 86 KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129 >03_05_0161 + 21400580-21401695 Length = 371 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 180 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 85 SWF C G P P P +A V + TS+ L + Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339 >04_04_0387 + 24869594-24871480 Length = 628 Score = 28.7 bits (61), Expect = 3.8 Identities = 18/69 (26%), Positives = 35/69 (50%) Frame = +1 Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 417 E V+ +EK+ + QW Q + + +K ++ + + A+ + NR R K ++++ Sbjct: 493 EEVESDDESEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRM 548 Query: 418 ARAGTFGKK 444 ARA T K Sbjct: 549 ARANTMVMK 557 >07_03_0020 + 12512841-12512879,12512964-12513009,12513830-12513954, 12514289-12514319,12514427-12514497,12514644-12514692, 12514780-12514880,12515594-12515722,12516076-12516120 Length = 211 Score = 28.3 bits (60), Expect = 5.0 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = +1 Query: 232 CEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 411 CE+ VD C N K K KE + + F T R++A FKSLKV Sbjct: 50 CEQDVDPC--NWKGVRCDSHTKRRGKEDTCRSAGINYF--TEDIAARSQAVARQFKSLKV 105 Query: 412 KAARA 426 KA A Sbjct: 106 KAVVA 110 >06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253 Length = 200 Score = 27.9 bits (59), Expect = 6.6 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Frame = +1 Query: 163 DPLKPTPSHNIPPQIR--VHSPYS-SCEESVDRCKLNEKWTESQWAQK 297 DP++ P N P+IR V Y+ S D C KW +W +K Sbjct: 79 DPVEWKPIENYQPEIRDQVKRIYALSGPTQPDFCTFPRKWQSGEWRKK 126 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,133,999 Number of Sequences: 37544 Number of extensions: 313278 Number of successful extensions: 928 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 928 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1442939384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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