Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1106
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) 28 5.1
SB_9147| Best HMM Match : Sushi (HMM E-Value=0) 28 5.1
SB_54432| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 28 6.7
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 28 6.7
SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42) 27 8.9
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 8.9
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_20540| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-11) 27 8.9
>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/61 (39%), Positives = 41/61 (67%)
Frame = +1
Query: 235 EESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVK 414
+++ + ++ +KW ++ WA+KLA ++KRA + D+DRFKL A+ K+NR K LK +
Sbjct: 282 KKAFEAAQVQDKWEQTAWARKLAMRKKRATLNDFDRFKLKLAKQKKNRLLRTEVKKLKKE 341
Query: 415 A 417
A
Sbjct: 342 A 342
>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
Length = 337
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 53 ALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR-LNQLHLTIF 196
+L+ D L + VS VDV + A+VD P + RQ ++ ++ H F
Sbjct: 70 SLIGDYDLFAREVSTVDVRIASHAIVDRPRASWKRQSLKGISNFHFLAF 118
>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1656
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = -1
Query: 246 HAFLTRRVGAVNAYLRRNIVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNFPFKGP 67
HA++T G V YL ++V +S + +G P+ + S WS T P GP
Sbjct: 1194 HAYITFPRGKVGRYLEGDMVYFSCYNGYFLVGIPVIKCNKS---WSKVEFTCNPVPC-GP 1249
Query: 66 SATRATRPGSTYRAKGMTFLQR 1
A G + + G TF QR
Sbjct: 1250 LPLPAR--GGSASSTGTTFSQR 1269
>SB_54432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 205 IRVHSPYSSCEESVDRCKLNEKWTESQ--WAQKLANKEKRAQMTDYD 339
+ +H+ Y +S KLN++ ++S WA KLA+ EK+ + D
Sbjct: 34 LELHNKYRKIHDSPPM-KLNDEMSKSAQAWADKLASMEKQQHSNEKD 79
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 193 IPPQ---IRVHSPYSSCEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 363
IPP+ +R ++SC + NE W + +K ++D RFK+ A
Sbjct: 1695 IPPRPIGLRCTDKHASCPSFAKSRRCNENWVKKNCKLSCQSKHCDRDLSDQTRFKVKKAH 1754
Query: 364 V 366
+
Sbjct: 1755 L 1755
>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 231 RRVGAVNAYLRRNIVRWSWFKRICCLGTPLPGP 133
+RV +AY N + W W++R+ G + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154
>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 231 RRVGAVNAYLRRNIVRWSWFKRICCLGTPLPGP 133
+RV +AY N + W W++R+ G + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154
>SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)
Length = 347
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 210 AYLRRNIVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNF 82
AY+ R+ WS+ K C + P+ S S + +IT TL +
Sbjct: 87 AYIIRDYFSWSFGKIACQIIIPMNDVSFSVSICTITVITLERY 129
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 479 PRRRPKNQLRVIVFVSATGYVTKTDFKKRIKNYF 580
P K +V VF KTD KK + NYF
Sbjct: 270 PSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYF 303
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 479 PRRRPKNQLRVIVFVSATGYVTKTDFKKRIKNYF 580
P K +V VF KTD KK + NYF
Sbjct: 664 PSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYF 697
>SB_20540| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-11)
Length = 301
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +2
Query: 479 PRRRPKNQLRVIVFVSATGYVTKTDFKKRIKNYF 580
P K +V VF KTD KK + NYF
Sbjct: 233 PSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYF 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,055
Number of Sequences: 59808
Number of extensions: 380385
Number of successful extensions: 1163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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