BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1106 (606 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 62 4e-10 Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.28 U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 31 0.48 AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 31 0.48 U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 29 3.4 U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 29 3.4 Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical p... 28 4.5 Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical p... 28 4.5 L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 4.5 Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical pr... 28 5.9 U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 5.9 AY455927-3|AAR26304.1| 347|Caenorhabditis elegans phosphoglucos... 28 5.9 >Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical protein C04F12.4 protein. Length = 135 Score = 61.7 bits (143), Expect = 4e-10 Identities = 36/88 (40%), Positives = 47/88 (53%) Frame = +2 Query: 17 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTIF 196 M F R V+ GRV +A G +GKL ++V+VID R +DGP S V R L L LT F Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60 Query: 197 RLKYAFTAPTRLVRKAWTDVNSMKNGQK 280 LK T+ V+ A+ +N QK Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQK 88 Score = 50.8 bits (116), Expect = 7e-07 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = +1 Query: 202 QIRVHSPYSSCEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRA 381 ++RV + + D K+ E + ++QWA+K+A + RA++TD++R+KL A+ RNR Sbjct: 63 KLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRNRI 122 Query: 382 RTAVFKSLK 408 LK Sbjct: 123 VRVELAKLK 131 >Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical protein Y49E10.19 protein. Length = 1159 Score = 32.3 bits (70), Expect = 0.28 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 277 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 423 E+QWA ++ RA +T+YDR K R+ T L V AR Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855 >U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like protein 3 protein. Length = 208 Score = 31.5 bits (68), Expect = 0.48 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 265 EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 426 EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++ Sbjct: 131 EKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184 >AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 protein. Length = 208 Score = 31.5 bits (68), Expect = 0.48 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +1 Query: 265 EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 426 EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++ Sbjct: 131 EKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184 >U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical protein K02F3.12b protein. Length = 608 Score = 28.7 bits (61), Expect = 3.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 571 LYSLLKICLSHITCRRHKNNYS*LVFWSPSWC 476 LY++++ TCRR K W PSWC Sbjct: 435 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 466 >U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical protein K02F3.12a protein. Length = 631 Score = 28.7 bits (61), Expect = 3.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 571 LYSLLKICLSHITCRRHKNNYS*LVFWSPSWC 476 LY++++ TCRR K W PSWC Sbjct: 458 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 489 >Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical protein Y49E10.23b protein. Length = 743 Score = 28.3 bits (60), Expect = 4.5 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = +1 Query: 232 CEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 411 CEE +DR K E + ES + ++ EK + + DR A ++ R V K LK+ Sbjct: 336 CEEQIDRLKGVESFVESS-SHRIEETEKERETAEEDR---EQAELEAAEYREQVEKMLKL 391 >Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical protein Y49E10.23a protein. Length = 734 Score = 28.3 bits (60), Expect = 4.5 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = +1 Query: 232 CEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 411 CEE +DR K E + ES + ++ EK + + DR A ++ R V K LK+ Sbjct: 336 CEEQIDRLKGVESFVESS-SHRIEETEKERETAEEDR---EQAELEAAEYREQVEKMLKL 391 >L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null protein 1 protein. Length = 1010 Score = 28.3 bits (60), Expect = 4.5 Identities = 18/38 (47%), Positives = 22/38 (57%) Frame = -1 Query: 453 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 340 RDI LA TS RS HL + + +PGT L S + L P Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782 >Z81130-8|CAB03416.1| 347|Caenorhabditis elegans Hypothetical protein T23G11.2 protein. Length = 347 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +2 Query: 476 APRRRPKNQLRVIVFVSATGYVTKTDFKKR 565 A R N L+++ +++ GYVTK DF++R Sbjct: 202 ALRSDDMNYLKLLEQLTSVGYVTKNDFEQR 231 >U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical protein W04D12.1 protein. Length = 85 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 262 NEKWTESQWAQKLANKEKRAQMTDYDRFK 348 N KW A K+A KEK+ +M D ++ K Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71 >AY455927-3|AAR26304.1| 347|Caenorhabditis elegans phosphoglucosamine acetyltransferaseprotein. Length = 347 Score = 27.9 bits (59), Expect = 5.9 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +2 Query: 476 APRRRPKNQLRVIVFVSATGYVTKTDFKKR 565 A R N L+++ +++ GYVTK DF++R Sbjct: 202 ALRSDDMNYLKLLEQLTSVGYVTKNDFEQR 231 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,873,802 Number of Sequences: 27780 Number of extensions: 267779 Number of successful extensions: 869 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 830 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 869 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1300523034 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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