Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1106
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...    62   4e-10
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.28 
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    31   0.48 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    31   0.48 
U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical p...    29   3.4  
U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    28   4.5  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   4.5  
Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    28   5.9  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 36/88 (40%), Positives = 47/88 (53%)
 Frame = +2

Query: 17  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTIF 196
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LT F
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 197 RLKYAFTAPTRLVRKAWTDVNSMKNGQK 280
            LK      T+ V+ A+      +N QK
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQK 88



 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 23/69 (33%), Positives = 40/69 (57%)
 Frame = +1

Query: 202 QIRVHSPYSSCEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRA 381
           ++RV       + + D  K+ E + ++QWA+K+A +  RA++TD++R+KL  A+  RNR 
Sbjct: 63  KLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRNRI 122

Query: 382 RTAVFKSLK 408
                  LK
Sbjct: 123 VRVELAKLK 131


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 277 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 423
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 265 EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 426
           EK  +   AQK A  EK+A+ T   + K TA +VK+ ++   + K    K A++
Sbjct: 131 EKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 265 EKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 426
           EK  +   AQK A  EK+A+ T   + K TA +VK+ ++   + K    K A++
Sbjct: 131 EKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184


>U00052-13|AAW88393.1|  608|Caenorhabditis elegans Hypothetical
           protein K02F3.12b protein.
          Length = 608

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 571 LYSLLKICLSHITCRRHKNNYS*LVFWSPSWC 476
           LY++++      TCRR K        W PSWC
Sbjct: 435 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 466


>U00052-12|AAK21428.2|  631|Caenorhabditis elegans Hypothetical
           protein K02F3.12a protein.
          Length = 631

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 571 LYSLLKICLSHITCRRHKNNYS*LVFWSPSWC 476
           LY++++      TCRR K        W PSWC
Sbjct: 458 LYNMVRYAADSSTCRRVKLAEHFEEAWEPSWC 489


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 232 CEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 411
           CEE +DR K  E + ES  + ++   EK  +  + DR     A ++    R  V K LK+
Sbjct: 336 CEEQIDRLKGVESFVESS-SHRIEETEKERETAEEDR---EQAELEAAEYREQVEKMLKL 391


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 232 CEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 411
           CEE +DR K  E + ES  + ++   EK  +  + DR     A ++    R  V K LK+
Sbjct: 336 CEEQIDRLKGVESFVESS-SHRIEETEKERETAEEDR---EQAELEAAEYREQVEKMLKL 391


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -1

Query: 453 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 340
           RDI LA  TS RS HL + +  +PGT  L S +  L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782


>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 476 APRRRPKNQLRVIVFVSATGYVTKTDFKKR 565
           A R    N L+++  +++ GYVTK DF++R
Sbjct: 202 ALRSDDMNYLKLLEQLTSVGYVTKNDFEQR 231


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 262 NEKWTESQWAQKLANKEKRAQMTDYDRFK 348
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 476 APRRRPKNQLRVIVFVSATGYVTKTDFKKR 565
           A R    N L+++  +++ GYVTK DF++R
Sbjct: 202 ALRSDDMNYLKLLEQLTSVGYVTKNDFEQR 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,802
Number of Sequences: 27780
Number of extensions: 267779
Number of successful extensions: 869
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)