Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1106
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 165 ICCLGTPLPGPSTSARVWSITSTTLTNF 82
           I CL  P PG S ++    +    L+N+
Sbjct: 5   ISCLVAPFPGASANSEAKRLYDDLLSNY 32


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 510 TLSWFFGRLLGAHFFRSRFRDIFLAEGTSTRSLHL 406
           T+ WF  R   A FFR   +    A GT++ +  L
Sbjct: 333 TIFWFLTRQNPAAFFRGMMQAWMTALGTASSAATL 367


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 452 GIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVICARFSLFANF 294
           GI  L K P+R++     L       ++L   +V++      +  RFS F  F
Sbjct: 543 GITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRF 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,689
Number of Sequences: 438
Number of extensions: 3300
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)