BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1106 (606 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 3.1 AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 23 3.1 AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 9.4 >DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine receptor alpha1subunit protein. Length = 601 Score = 22.6 bits (46), Expect = 3.1 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = -1 Query: 165 ICCLGTPLPGPSTSARVWSITSTTLTNF 82 I CL P PG S ++ + L+N+ Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNY 32 >AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter Am-EAAT protein. Length = 543 Score = 22.6 bits (46), Expect = 3.1 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -1 Query: 510 TLSWFFGRLLGAHFFRSRFRDIFLAEGTSTRSLHL 406 T+ WF R A FFR + A GT++ + L Sbjct: 333 TIFWFLTRQNPAAFFRGMMQAWMTALGTASSAATL 367 >AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate receptor 1 protein. Length = 953 Score = 21.0 bits (42), Expect = 9.4 Identities = 14/53 (26%), Positives = 23/53 (43%) Frame = -2 Query: 452 GIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVICARFSLFANF 294 GI L K P+R++ L ++L +V++ + RFS F F Sbjct: 543 GITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRF 595 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 157,689 Number of Sequences: 438 Number of extensions: 3300 Number of successful extensions: 6 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 17848938 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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