Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1106
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    58   6e-09
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            57   8e-09
At5g15890.1 68418.m01859 expressed protein                             29   3.2  
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai...    28   4.2  
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    28   4.2  
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ...    28   5.5  
At1g02290.1 68414.m00171 expressed protein                             28   5.5  
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    27   7.3  
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    27   7.3  
At1g03470.1 68414.m00328 kinase interacting family protein simil...    27   9.6  

>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 33/58 (56%), Positives = 38/58 (65%)
 Frame = +2

Query: 17  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 190
           M F RYVE GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+   +L LT
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLT 56



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 16/45 (35%), Positives = 32/45 (71%)
 Frame = +1

Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 372
           E++++  +  KW +S W +KL  +++RA + D+DRFK+  A++K+
Sbjct: 73  EAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117


>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 33/58 (56%), Positives = 39/58 (67%)
 Frame = +2

Query: 17  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 190
           M F R+VE GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+ L +L LT
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLT 56



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 17/45 (37%), Positives = 32/45 (71%)
 Frame = +1

Query: 238 ESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 372
           E++++  +  KW +S W +KL  +++RA + D+DRFK+  A++KR
Sbjct: 73  EAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 141 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 43
           P P T  +VW+ TS   T      P   +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318


>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
           Pfam domain, PF04935: Surfeit locus protein 6
          Length = 386

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = +1

Query: 205 IRVHSPYSSCEESVDRCKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRAR 384
           I+VH      ++S+ + K  ++    +W +++  ++K        R    A R+++N+ R
Sbjct: 300 IKVHDDPKLLKQSIHKDKKRQEKNAEKWKERIEGQQKFKVEKQQKRSGNIADRIEQNKMR 359

Query: 385 TAVFKSLKVKAARAGTFGKK 444
             + K  K K  R G  G+K
Sbjct: 360 -KIAKREK-KLLRPGFEGRK 377


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 35  VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 187
           + PG V ++  G  KGK V  +  +     LV GP   +GVP +  R+NQ ++
Sbjct: 89  ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139


>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
           contains weak similarity to Swiss-Prot:P10366 ATP
           phosphoribosyltransferase [Escherichia coli]
          Length = 1402

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 515 VFVSATGYVTKTDFKKRIKNYFLASKK 595
           VFV+AT  V   DF+ RI++ F+ S +
Sbjct: 433 VFVAATSNVMSLDFRPRIRHDFILSNR 459


>At1g02290.1 68414.m00171 expressed protein
          Length = 443

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 136 TRQWST*ATDPLKPTPSHNIPPQIRVHSPYSSCEESV 246
           T Q S   T+P+   P+H +P  +RV S YS  E+++
Sbjct: 326 TTQRSIQGTEPVFHDPTHTVPSALRV-SNYSITEQNI 361


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 35  VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 187
           + PG V ++  G  KGK V  +  +     LV GP   +GVP +  R+NQ ++
Sbjct: 89  ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 35  VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 187
           + PG V ++  G  KGK V  +  +     LV GP   +GVP +  R+NQ ++
Sbjct: 89  ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139


>At1g03470.1 68414.m00328 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 269

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 163 DPLKPTPSHNIPPQIRVHSPYSSCEES--VDRCKLNEKWTESQ 285
           D L+P+  H        H   S+C+ES   + C+ +E++ ES+
Sbjct: 81  DLLRPSSVHKHGSDSESHEKSSTCDESSWSEACETHEEYAESE 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,289
Number of Sequences: 28952
Number of extensions: 242645
Number of successful extensions: 721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)