Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1105
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    28   1.6  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   2.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.6  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.6  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    26   4.8  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   6.4  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.4  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    25   8.4  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 341 CGHSIPIRAQNSKNYDGPFTAS 276
           C H I + +Q SKN++G F +S
Sbjct: 317 CSHEINVLSQQSKNFNGVFESS 338


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 365 GHTSCTICTRDLKISKCPCPL 427
           GH  C+ C ++L+    PCP+
Sbjct: 168 GHLFCSTCAKELRKKTVPCPV 188


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 388 TYCTACMTYHDFRKQFVDTPFQFVHRT 308
           +Y   C   HD RKQ +D+ F+  +RT
Sbjct: 96  SYHRECFRCHDCRKQIIDSNFKRDNRT 122


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 11  FPAGAPSRFRNYTPACRARVPATCSP 88
           FPA +P   R  TP   AR P   SP
Sbjct: 34  FPASSPGSTRLTTPRTTARTPLASSP 59


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 591 AQRGVIVCTEYAYSGLLIPA 532
           A++G+++CT  A  GL IPA
Sbjct: 385 AEKGILLCTNVAARGLDIPA 404


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 376 LYNMYKRPENLEVPLSATRDAKNSVYAMND 465
           L+N+  +     +P+S+T+D+K S Y+  D
Sbjct: 104 LHNLLSKAFRSTLPMSSTKDSKKSRYSSPD 133


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 653 KKEHHLVGQAVLCWIHHAYLRRSVV*LCVL 564
           KK +H +      W  H+++R  +  +C+L
Sbjct: 767 KKNNHEINSLTALWFIHSFVRTMIEIICLL 796


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 731 PDGCVGVLGVVPTY--SLRRLH 672
           P GC  ++ V PT+  ++RR+H
Sbjct: 304 PSGCFDIIDVAPTFAEAIRRIH 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,646
Number of Sequences: 5004
Number of extensions: 66577
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)