Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1105
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1809 - 40029628-40030539 34 0.13
01_01_0256 - 2083973-2084816,2084922-2086093 31 0.71
09_04_0651 - 19224403-19225032 31 0.94
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 31 0.94
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 29 3.8
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 5.0
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350... 29 5.0
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 29 5.0
04_04_0387 + 24869594-24871480 28 6.6
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 6.6
08_02_1334 - 26224546-26225337 28 8.8
03_01_0095 + 759530-760123 28 8.8
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 28 8.8
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 8.8
>01_06_1809 - 40029628-40030539
Length = 303
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 338 HKLLPKIMIGHTSCTICTRDLKISKCPCPL 427
HK I GHT C +C+R+L +S+ CPL
Sbjct: 262 HKGAAFIPCGHTFCRLCSRELWVSRGNCPL 291
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 563 SVHTITPRCAAGRHDESST-GRLGPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQ 730
S + + C G D+SST R GPP +P+ +Q N A+ H H Q
Sbjct: 207 STDSASVNCLLGLEDDSSTHSRGGPPNSSPAEEQRANQQKLAAAAAVAAARHPHDVQ 263
>09_04_0651 - 19224403-19225032
Length = 209
Score = 31.1 bits (67), Expect = 0.94
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 356 IMIGHTSCTICTRDLKISKCPCPL 427
I GHT C C R+L++ + CPL
Sbjct: 174 IPCGHTFCRACARELRVGRGRCPL 197
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 31.1 bits (67), Expect = 0.94
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 497 KNLISFNTRAACAG-IRSPEYAYSVHTITPRCAAGRHDESSTGRLGPPGGA 646
KN ++ + R C G + A S+ T T RCA T RL PPG A
Sbjct: 700 KNPVTTHQRLECRGPLAQGTSACSMQTQTQRCAISDLSGGLTSRLQPPGEA 750
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 158 VQLSAIINEVQAKKRGAASVERIAESTWPARG 63
+Q SA+ N + A + G A VE + E+ W ARG
Sbjct: 232 IQASAV-NWLAAMEGGGAGVEGVKETAWSARG 262
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 132 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRG 4
S S KAGC RAD + G R G+ G P GN G
Sbjct: 119 SGSGKAGCVGSRADQDGRLDGREVRDGGI----SSGGPRGNTG 157
>05_01_0442 -
3500849-3500866,3500950-3501027,3501260-3501352,
3501419-3501536,3502815-3502945,3503027-3503299,
3504825-3504882,3505065-3505388,3507404-3507852,
3509514-3509554,3510263-3510412,3510519-3510906
Length = 706
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 132 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRG 4
S S K GC RAD + G R G+ G P GN G
Sbjct: 214 SGSGKGGCVGSRADQDGRIGGREVRDGGI----SSGGPKGNTG 252
>04_03_0616 -
18052596-18053779,18053935-18054099,18056236-18056260,
18057259-18057312,18057354-18057619,18058633-18059371
Length = 810
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 580 CNCVY*ICVFWTPDPGACCPCIKGYQ 503
C Y +C+ T PG C C KGYQ
Sbjct: 209 CKGDYSVCLNSTNGPGYICNCKKGYQ 234
>04_04_0387 + 24869594-24871480
Length = 628
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = +2
Query: 428 LATPRTVCTP*MIR---HFTLLHLVTKNLISFNTRAACAGIRSPEYAYSVHTITPRCAAG 598
L P+T +P ++R H++ L LV L++ + A +R + ++H + AAG
Sbjct: 10 LLYPKTPQSPRLLRRNPHYSGLRLVHPLLLATVSPPPPAALRRRRNSTTIHASSSSAAAG 69
Query: 599 RHDESSTGRLGPPGGAPSYQQPLNNATCA 685
S PP P P + T A
Sbjct: 70 AAAASFPASSTPPPRPPRTDPPEEHPTVA 98
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 304 FEFCARIGMECPQTASENHDRSYKLY-NMYKRPENLEVPLSATRD 435
+ F A PQ + N R Y Y N Y P +L+VPL A D
Sbjct: 53 YVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAPYD 97
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 356 IMIGHTSCTICTRDLKISKCPCPL 427
I GHT C C R+L + CPL
Sbjct: 228 IPCGHTFCRTCARELLAGRGRCPL 251
>03_01_0095 + 759530-760123
Length = 197
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 143 IINEVQAKKRGAASVERIAES--TWPARGLGTLGYSCGTAREHP 18
++ + ++ GAA + ES WPA G+G GY C A HP
Sbjct: 17 LLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCC-PAPPHP 59
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 290 DRHNFSSSVHELEWSVHKLLPKIMIGHTSCTI 385
D +N SS+V L+P ++ HT CT+
Sbjct: 286 DTYNISSNVRGTRPDYRSLVPSSILNHTICTV 317
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 194 SLCCLLRQRDY*VQLSAIINEVQAKKRGAASV 99
S+CCL+ + Y V S +IN +A +G SV
Sbjct: 324 SICCLIHKYGYRVDKSLLINWFKATCKGLKSV 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,945,234
Number of Sequences: 37544
Number of extensions: 489537
Number of successful extensions: 1438
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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