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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1105
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1809 - 40029628-40030539                                         34   0.13 
01_01_0256 - 2083973-2084816,2084922-2086093                           31   0.71 
09_04_0651 - 19224403-19225032                                         31   0.94 
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547...    31   0.94 
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954...    29   3.8  
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79...    29   5.0  
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350...    29   5.0  
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562...    29   5.0  
04_04_0387 + 24869594-24871480                                         28   6.6  
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105           28   6.6  
08_02_1334 - 26224546-26225337                                         28   8.8  
03_01_0095 + 759530-760123                                             28   8.8  
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653...    28   8.8  
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    28   8.8  

>01_06_1809 - 40029628-40030539
          Length = 303

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 338 HKLLPKIMIGHTSCTICTRDLKISKCPCPL 427
           HK    I  GHT C +C+R+L +S+  CPL
Sbjct: 262 HKGAAFIPCGHTFCRLCSRELWVSRGNCPL 291


>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 563 SVHTITPRCAAGRHDESST-GRLGPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQ 730
           S  + +  C  G  D+SST  R GPP  +P+ +Q  N    A+        H H  Q
Sbjct: 207 STDSASVNCLLGLEDDSSTHSRGGPPNSSPAEEQRANQQKLAAAAAVAAARHPHDVQ 263


>09_04_0651 - 19224403-19225032
          Length = 209

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 IMIGHTSCTICTRDLKISKCPCPL 427
           I  GHT C  C R+L++ +  CPL
Sbjct: 174 IPCGHTFCRACARELRVGRGRCPL 197


>02_05_0024 +
           25152090-25153151,25153232-25154145,25154499-25154709,
           25154757-25154921
          Length = 783

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 497 KNLISFNTRAACAG-IRSPEYAYSVHTITPRCAAGRHDESSTGRLGPPGGA 646
           KN ++ + R  C G +     A S+ T T RCA        T RL PPG A
Sbjct: 700 KNPVTTHQRLECRGPLAQGTSACSMQTQTQRCAISDLSGGLTSRLQPPGEA 750


>01_02_0099 +
           11092529-11093140,11094153-11094424,11095378-11095438,
           11095553-11095622,11095645-11095901,11096466-11096639
          Length = 481

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 158 VQLSAIINEVQAKKRGAASVERIAESTWPARG 63
           +Q SA+ N + A + G A VE + E+ W ARG
Sbjct: 232 IQASAV-NWLAAMEGGGAGVEGVKETAWSARG 262


>09_01_0043 +
           790859-790873,791410-791603,792521-792605,792719-793075
          Length = 216

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -2

Query: 132 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRG 4
           S S KAGC   RAD    + G   R  G+      G P GN G
Sbjct: 119 SGSGKAGCVGSRADQDGRLDGREVRDGGI----SSGGPRGNTG 157


>05_01_0442 -
           3500849-3500866,3500950-3501027,3501260-3501352,
           3501419-3501536,3502815-3502945,3503027-3503299,
           3504825-3504882,3505065-3505388,3507404-3507852,
           3509514-3509554,3510263-3510412,3510519-3510906
          Length = 706

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -2

Query: 132 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRG 4
           S S K GC   RAD    + G   R  G+      G P GN G
Sbjct: 214 SGSGKGGCVGSRADQDGRIGGREVRDGGI----SSGGPKGNTG 252


>04_03_0616 -
           18052596-18053779,18053935-18054099,18056236-18056260,
           18057259-18057312,18057354-18057619,18058633-18059371
          Length = 810

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 580 CNCVY*ICVFWTPDPGACCPCIKGYQ 503
           C   Y +C+  T  PG  C C KGYQ
Sbjct: 209 CKGDYSVCLNSTNGPGYICNCKKGYQ 234


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = +2

Query: 428 LATPRTVCTP*MIR---HFTLLHLVTKNLISFNTRAACAGIRSPEYAYSVHTITPRCAAG 598
           L  P+T  +P ++R   H++ L LV   L++  +    A +R    + ++H  +   AAG
Sbjct: 10  LLYPKTPQSPRLLRRNPHYSGLRLVHPLLLATVSPPPPAALRRRRNSTTIHASSSSAAAG 69

Query: 599 RHDESSTGRLGPPGGAPSYQQPLNNATCA 685
               S      PP   P    P  + T A
Sbjct: 70  AAAASFPASSTPPPRPPRTDPPEEHPTVA 98


>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
          Length = 430

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 304 FEFCARIGMECPQTASENHDRSYKLY-NMYKRPENLEVPLSATRD 435
           + F A      PQ  + N  R Y  Y N Y  P +L+VPL A  D
Sbjct: 53  YVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAPYD 97


>08_02_1334 - 26224546-26225337
          Length = 263

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 356 IMIGHTSCTICTRDLKISKCPCPL 427
           I  GHT C  C R+L   +  CPL
Sbjct: 228 IPCGHTFCRTCARELLAGRGRCPL 251


>03_01_0095 + 759530-760123
          Length = 197

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 143 IINEVQAKKRGAASVERIAES--TWPARGLGTLGYSCGTAREHP 18
           ++ + ++   GAA    + ES   WPA G+G  GY C  A  HP
Sbjct: 17  LLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCC-PAPPHP 59


>02_04_0640 -
           24664841-24664855,24664895-24664978,24665232-24665319,
           24665457-24667318
          Length = 682

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 290 DRHNFSSSVHELEWSVHKLLPKIMIGHTSCTI 385
           D +N SS+V         L+P  ++ HT CT+
Sbjct: 286 DTYNISSNVRGTRPDYRSLVPSSILNHTICTV 317


>01_01_0047 +
           334809-334877,334966-335074,335159-335299,336337-336498,
           336577-336734,337180-337310,337385-337472,337587-337690,
           338346-338444,339060-339116,339262-339337,339519-339602,
           339969-340010,340128-340198,341516-341564,342370-342441,
           343149-343286,343393-343473,344166-344353,344591-345188,
           345274-345342,346729-346854,347048-347175,347986-348142,
           348342-348388,348472-348535,348691-348765,349292-349414,
           349797-349982,351179-351303,351390-351459,351974-352101,
           352585-352726,353065-353163,353239-353285,353598-353652,
           353758-353967,354686-354757,354836-354905,355231-355414,
           355521-355644,355732-355863,356252-356317,356805-356852,
           357572-357676,357728-357865,358097-358399,358482-358594,
           359082-359148,359236-359310,359395-359517,359610-359618,
           360156-360320,360401-360502,361545-361696,361794-361995,
           362079-362126,362215-362298,362613-362657,363302-363385,
           363890-363970,364044-364133,364217-364279,364824-364841,
           365238-365378,365494-365550,366091-366185,366275-366383,
           367067-367156,367308-367387,367480-367558,367742-367903,
           368005-368136,368335-368469,368553-368618,369317-369457,
           369575-369648,369685-369910
          Length = 2905

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 194 SLCCLLRQRDY*VQLSAIINEVQAKKRGAASV 99
           S+CCL+ +  Y V  S +IN  +A  +G  SV
Sbjct: 324 SICCLIHKYGYRVDKSLLINWFKATCKGLKSV 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,945,234
Number of Sequences: 37544
Number of extensions: 489537
Number of successful extensions: 1438
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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