BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1105 (733 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1809 - 40029628-40030539 34 0.13 01_01_0256 - 2083973-2084816,2084922-2086093 31 0.71 09_04_0651 - 19224403-19225032 31 0.94 02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 31 0.94 01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 29 3.8 09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 5.0 05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350... 29 5.0 04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562... 29 5.0 04_04_0387 + 24869594-24871480 28 6.6 03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 6.6 08_02_1334 - 26224546-26225337 28 8.8 03_01_0095 + 759530-760123 28 8.8 02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 28 8.8 01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 8.8 >01_06_1809 - 40029628-40030539 Length = 303 Score = 33.9 bits (74), Expect = 0.13 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +2 Query: 338 HKLLPKIMIGHTSCTICTRDLKISKCPCPL 427 HK I GHT C +C+R+L +S+ CPL Sbjct: 262 HKGAAFIPCGHTFCRLCSRELWVSRGNCPL 291 >01_01_0256 - 2083973-2084816,2084922-2086093 Length = 671 Score = 31.5 bits (68), Expect = 0.71 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +2 Query: 563 SVHTITPRCAAGRHDESST-GRLGPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQ 730 S + + C G D+SST R GPP +P+ +Q N A+ H H Q Sbjct: 207 STDSASVNCLLGLEDDSSTHSRGGPPNSSPAEEQRANQQKLAAAAAVAAARHPHDVQ 263 >09_04_0651 - 19224403-19225032 Length = 209 Score = 31.1 bits (67), Expect = 0.94 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +2 Query: 356 IMIGHTSCTICTRDLKISKCPCPL 427 I GHT C C R+L++ + CPL Sbjct: 174 IPCGHTFCRACARELRVGRGRCPL 197 >02_05_0024 + 25152090-25153151,25153232-25154145,25154499-25154709, 25154757-25154921 Length = 783 Score = 31.1 bits (67), Expect = 0.94 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +2 Query: 497 KNLISFNTRAACAG-IRSPEYAYSVHTITPRCAAGRHDESSTGRLGPPGGA 646 KN ++ + R C G + A S+ T T RCA T RL PPG A Sbjct: 700 KNPVTTHQRLECRGPLAQGTSACSMQTQTQRCAISDLSGGLTSRLQPPGEA 750 >01_02_0099 + 11092529-11093140,11094153-11094424,11095378-11095438, 11095553-11095622,11095645-11095901,11096466-11096639 Length = 481 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 158 VQLSAIINEVQAKKRGAASVERIAESTWPARG 63 +Q SA+ N + A + G A VE + E+ W ARG Sbjct: 232 IQASAV-NWLAAMEGGGAGVEGVKETAWSARG 262 >09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-793075 Length = 216 Score = 28.7 bits (61), Expect = 5.0 Identities = 17/43 (39%), Positives = 19/43 (44%) Frame = -2 Query: 132 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRG 4 S S KAGC RAD + G R G+ G P GN G Sbjct: 119 SGSGKAGCVGSRADQDGRLDGREVRDGGI----SSGGPRGNTG 157 >05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352, 3501419-3501536,3502815-3502945,3503027-3503299, 3504825-3504882,3505065-3505388,3507404-3507852, 3509514-3509554,3510263-3510412,3510519-3510906 Length = 706 Score = 28.7 bits (61), Expect = 5.0 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = -2 Query: 132 SSSKKAGCRQCRADCGEHVAGTRARHAGV*LRNREGAPAGNRG 4 S S K GC RAD + G R G+ G P GN G Sbjct: 214 SGSGKGGCVGSRADQDGRIGGREVRDGGI----SSGGPKGNTG 252 >04_03_0616 - 18052596-18053779,18053935-18054099,18056236-18056260, 18057259-18057312,18057354-18057619,18058633-18059371 Length = 810 Score = 28.7 bits (61), Expect = 5.0 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 580 CNCVY*ICVFWTPDPGACCPCIKGYQ 503 C Y +C+ T PG C C KGYQ Sbjct: 209 CKGDYSVCLNSTNGPGYICNCKKGYQ 234 >04_04_0387 + 24869594-24871480 Length = 628 Score = 28.3 bits (60), Expect = 6.6 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Frame = +2 Query: 428 LATPRTVCTP*MIR---HFTLLHLVTKNLISFNTRAACAGIRSPEYAYSVHTITPRCAAG 598 L P+T +P ++R H++ L LV L++ + A +R + ++H + AAG Sbjct: 10 LLYPKTPQSPRLLRRNPHYSGLRLVHPLLLATVSPPPPAALRRRRNSTTIHASSSSAAAG 69 Query: 599 RHDESSTGRLGPPGGAPSYQQPLNNATCA 685 S PP P P + T A Sbjct: 70 AAAASFPASSTPPPRPPRTDPPEEHPTVA 98 >03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 Length = 430 Score = 28.3 bits (60), Expect = 6.6 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +1 Query: 304 FEFCARIGMECPQTASENHDRSYKLY-NMYKRPENLEVPLSATRD 435 + F A PQ + N R Y Y N Y P +L+VPL A D Sbjct: 53 YVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAPYD 97 >08_02_1334 - 26224546-26225337 Length = 263 Score = 27.9 bits (59), Expect = 8.8 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +2 Query: 356 IMIGHTSCTICTRDLKISKCPCPL 427 I GHT C C R+L + CPL Sbjct: 228 IPCGHTFCRTCARELLAGRGRCPL 251 >03_01_0095 + 759530-760123 Length = 197 Score = 27.9 bits (59), Expect = 8.8 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -3 Query: 143 IINEVQAKKRGAASVERIAES--TWPARGLGTLGYSCGTAREHP 18 ++ + ++ GAA + ES WPA G+G GY C A HP Sbjct: 17 LLKQPESGPDGAAPPFELDESDVVWPAGGVGDDGYCC-PAPPHP 59 >02_04_0640 - 24664841-24664855,24664895-24664978,24665232-24665319, 24665457-24667318 Length = 682 Score = 27.9 bits (59), Expect = 8.8 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +2 Query: 290 DRHNFSSSVHELEWSVHKLLPKIMIGHTSCTI 385 D +N SS+V L+P ++ HT CT+ Sbjct: 286 DTYNISSNVRGTRPDYRSLVPSSILNHTICTV 317 >01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498, 336577-336734,337180-337310,337385-337472,337587-337690, 338346-338444,339060-339116,339262-339337,339519-339602, 339969-340010,340128-340198,341516-341564,342370-342441, 343149-343286,343393-343473,344166-344353,344591-345188, 345274-345342,346729-346854,347048-347175,347986-348142, 348342-348388,348472-348535,348691-348765,349292-349414, 349797-349982,351179-351303,351390-351459,351974-352101, 352585-352726,353065-353163,353239-353285,353598-353652, 353758-353967,354686-354757,354836-354905,355231-355414, 355521-355644,355732-355863,356252-356317,356805-356852, 357572-357676,357728-357865,358097-358399,358482-358594, 359082-359148,359236-359310,359395-359517,359610-359618, 360156-360320,360401-360502,361545-361696,361794-361995, 362079-362126,362215-362298,362613-362657,363302-363385, 363890-363970,364044-364133,364217-364279,364824-364841, 365238-365378,365494-365550,366091-366185,366275-366383, 367067-367156,367308-367387,367480-367558,367742-367903, 368005-368136,368335-368469,368553-368618,369317-369457, 369575-369648,369685-369910 Length = 2905 Score = 27.9 bits (59), Expect = 8.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -3 Query: 194 SLCCLLRQRDY*VQLSAIINEVQAKKRGAASV 99 S+CCL+ + Y V S +IN +A +G SV Sbjct: 324 SICCLIHKYGYRVDKSLLINWFKATCKGLKSV 355 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,945,234 Number of Sequences: 37544 Number of extensions: 489537 Number of successful extensions: 1438 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1438 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1921741964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -