Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1105
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_31353| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 30 2.2
SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0) 29 5.1
SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10) 29 5.1
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28) 29 5.1
SB_15733| Best HMM Match : Vicilin_N (HMM E-Value=1.2) 28 9.0
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 28 9.0
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 28 9.0
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_21593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +1
Query: 319 RIGMECPQTASENHDRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQTFHTPSFGDE 498
R+GM Q E H ++ + ++K E + VP+ ++ K MND + + GD+
Sbjct: 24 RMGMTECQNTDEVHKKTTHRHGLWKHDEMITVPMMISQMMK---VVMNDDDYKEDNLGDD 80
Query: 499 EFD 507
+ D
Sbjct: 81 DDD 83
>SB_31353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 548 PEYAYSVHTITPRCAAGRHDESSTGRLGPPGGAPSYQQPLNNATCAS 688
PE Y +T+ C GR D S+ L P G P Y P + TC S
Sbjct: 197 PEGIYGENTVIYYCCDGRGDTSTPIWL--PSGGPFYLMPFISKTCQS 241
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 332 SVHKLLPKIMIGHTSCTICTRDLKISKCP 418
S H + I GHT C +CTRD + KCP
Sbjct: 245 SRHTPVALIPCGHTFCQMCTRDCR--KCP 271
>SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 301 IMTVHLQHQVLIF---LKGTSTPAVAAHKYLAIDVSQKVHFVVYYDNVI 164
I+ +H +++ L GT AV +H YL +++S +++ + N++
Sbjct: 305 IIRIHRSKSPIVYNYTLGGTPLKAVQSHPYLGVELSSNLNWNTHVTNIV 353
>SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 907
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 301 IMTVHLQHQVLIF---LKGTSTPAVAAHKYLAIDVSQKVHFVVYYDNVI 164
I+ +H +++ L GT AV +H YL +++S +++ + N++
Sbjct: 790 IIRIHRSKSPIVYNYTLGGTPLKAVQSHPYLGVELSSNLNWNTHVTNIV 838
>SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10)
Length = 805
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 301 IMTVHLQHQVLIF---LKGTSTPAVAAHKYLAIDVSQKVHFVVYYDNVI 164
I+ +H +++ L GT AV +H YL +++S +++ + N++
Sbjct: 688 IIRIHRSKSPIVYNYTLGGTPLKAVQSHPYLGVELSSNLNWNTHVTNIV 736
>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 301 IMTVHLQHQVLIF---LKGTSTPAVAAHKYLAIDVSQKVHFVVYYDNVI 164
I+ +H +++ L GT AV +H YL +++S +++ + N++
Sbjct: 1159 IIRIHRSKSPIVYNYTLGGTPLKAVQSHPYLGVELSSNLNWNTHVTNIV 1207
>SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)
Length = 591
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 301 IMTVHLQHQVLIF---LKGTSTPAVAAHKYLAIDVSQKVHFVVYYDNVI 164
I+ +H +++ L GT AV +H YL +++S +++ + N++
Sbjct: 279 IIRIHRSKSPIVYNYTLGGTPLKAVQSHPYLGVELSSNLNWNTHVTNIV 327
>SB_15733| Best HMM Match : Vicilin_N (HMM E-Value=1.2)
Length = 220
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Frame = +1
Query: 259 LRKSVLDAVNGPS*FFEFCARIGMECPQTASENHDRSYKLYNMYKRPENLEVPLSATRDA 438
LR+ + + P C+ P+ H+R+ ++ E+L+VP S R
Sbjct: 108 LRERQTEDLKVPGSIRRVCSNSEKSRPEQTKSGHERAEIAQLGERQTEDLKVPGSIRRVC 167
Query: 439 KNSVYAMNDQT------FHTPSFGDEEFDIL*YTGSMRR----DQESRIRIF 564
+NS + +QT G+ + + L GS+RR ++SR+ F
Sbjct: 168 RNSENSRPEQTKSGHERAEIAQLGERQTEDLKVPGSIRRVCRNSEKSRVSAF 219
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 567 YTQLHHAAPQVGMMNPAQDGLAH 635
Y+ L P+ GM NP +DGL H
Sbjct: 362 YSDLTLQPPETGMRNPLKDGLNH 384
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 325 GMECPQTASENHDRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQTFHTPSFG 492
G +CP T+ D M++ E+ A + ++N+ ++ N Q+F TP G
Sbjct: 784 GDDCPSTSQREDDNPVS--KMFQE----EIRARARKYSQNTGFSQNQQSFSTPEHG 833
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/97 (23%), Positives = 50/97 (51%)
Frame = +1
Query: 181 KQQSELSD*RRLPNICVQRLQGSKYLLRKSVLDAVNGPS*FFEFCARIGMECPQTASENH 360
+++S++S +R ++ +++ Q + YL +S+ +N S E A++ EN
Sbjct: 1286 RRRSDMSALKRANDVLIKQNQ-TLYLETESLKATINELS---EKSAQLREVSIHLTKENE 1341
Query: 361 DRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQT 471
+ + ++ R E+ E L T ++SVYA+N+ +
Sbjct: 1342 KLTTENDDIKTRLEHTEKELRKTEGERSSVYALNESS 1378
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,047,058
Number of Sequences: 59808
Number of extensions: 553977
Number of successful extensions: 1740
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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