BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1105 (733 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 31 0.64 Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 31 0.64 U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 30 1.5 U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 30 1.5 AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 30 1.5 AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 30 1.5 U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 29 2.6 AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 29 2.6 Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.5 Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.5 AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.5 >Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical protein F02E9.4b protein. Length = 1507 Score = 31.5 bits (68), Expect = 0.64 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +2 Query: 629 GPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQD 733 G GG S QQP NNAT + + HQ HQ+ Sbjct: 11 GNNGGDQSQQQPTNNATLFLLQMIQQSQHQQQHQN 45 >Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical protein F02E9.4a protein. Length = 1505 Score = 31.5 bits (68), Expect = 0.64 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +2 Query: 629 GPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQD 733 G GG S QQP NNAT + + HQ HQ+ Sbjct: 11 GNNGGDQSQQQPTNNATLFLLQMIQQSQHQQQHQN 45 >U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical protein C13B9.4c protein. Length = 541 Score = 30.3 bits (65), Expect = 1.5 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = -1 Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467 WCN Y + W P P CP +KG ++ K+C +S Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116 >U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical protein C13B9.4a protein. Length = 546 Score = 30.3 bits (65), Expect = 1.5 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = -1 Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467 WCN Y + W P P CP +KG ++ K+C +S Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116 >AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin receptor-like proteinSEB-1C protein. Length = 546 Score = 30.3 bits (65), Expect = 1.5 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = -1 Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467 WCN Y + W P P CP +KG ++ K+C +S Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116 >AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin receptor-like proteinSEB-1B protein. Length = 541 Score = 30.3 bits (65), Expect = 1.5 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = -1 Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467 WCN Y + W P P CP +KG ++ K+C +S Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116 >U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical protein C13B9.4b protein. Length = 536 Score = 29.5 bits (63), Expect = 2.6 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%) Frame = -1 Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECE 473 WCN Y + W P P CP +KG ++ +K C+ Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114 >AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin receptor-like proteinSEB-1A protein. Length = 536 Score = 29.5 bits (63), Expect = 2.6 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%) Frame = -1 Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECE 473 WCN Y + W P P CP +KG ++ +K C+ Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114 >Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical protein C02F4.1 protein. Length = 1781 Score = 28.7 bits (61), Expect = 4.5 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +2 Query: 623 RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721 +L PP P+ P+N ++Y+ R++ H H Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746 >Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein C02F4.1 protein. Length = 1781 Score = 28.7 bits (61), Expect = 4.5 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +2 Query: 623 RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721 +L PP P+ P+N ++Y+ R++ H H Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746 >AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. Length = 1781 Score = 28.7 bits (61), Expect = 4.5 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +2 Query: 623 RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721 +L PP P+ P+N ++Y+ R++ H H Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,188,998 Number of Sequences: 27780 Number of extensions: 408398 Number of successful extensions: 1055 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1055 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1714401074 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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