SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1105
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    31   0.64 
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U21309-6|AAT92086.1|  541|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U21309-4|AAN73883.1|  546|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AY314778-1|AAQ84885.1|  546|Caenorhabditis elegans calcitonin re...    30   1.5  
AY314777-1|AAQ84884.1|  541|Caenorhabditis elegans calcitonin re...    30   1.5  
U21309-5|AAT92085.1|  536|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AY314776-1|AAQ84883.1|  536|Caenorhabditis elegans calcitonin re...    29   2.6  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      29   4.5  

>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 629 GPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQD 733
           G  GG  S QQP NNAT    +  +   HQ  HQ+
Sbjct: 11  GNNGGDQSQQQPTNNATLFLLQMIQQSQHQQQHQN 45


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 629 GPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQD 733
           G  GG  S QQP NNAT    +  +   HQ  HQ+
Sbjct: 11  GNNGGDQSQQQPTNNATLFLLQMIQQSQHQQQHQN 45


>U21309-6|AAT92086.1|  541|Caenorhabditis elegans Hypothetical
           protein C13B9.4c protein.
          Length = 541

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -1

Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
           WCN  Y   + W P P        CP +KG    ++  K+C +S
Sbjct: 73  WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116


>U21309-4|AAN73883.1|  546|Caenorhabditis elegans Hypothetical
           protein C13B9.4a protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -1

Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
           WCN  Y   + W P P        CP +KG    ++  K+C +S
Sbjct: 73  WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116


>AY314778-1|AAQ84885.1|  546|Caenorhabditis elegans calcitonin
           receptor-like proteinSEB-1C protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -1

Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
           WCN  Y   + W P P        CP +KG    ++  K+C +S
Sbjct: 73  WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116


>AY314777-1|AAQ84884.1|  541|Caenorhabditis elegans calcitonin
           receptor-like proteinSEB-1B protein.
          Length = 541

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -1

Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
           WCN  Y   + W P P        CP +KG    ++  K+C +S
Sbjct: 73  WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116


>U21309-5|AAT92085.1|  536|Caenorhabditis elegans Hypothetical
           protein C13B9.4b protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -1

Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECE 473
           WCN  Y   + W P P        CP +KG    ++ +K C+
Sbjct: 73  WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114


>AY314776-1|AAQ84883.1|  536|Caenorhabditis elegans calcitonin
           receptor-like proteinSEB-1A protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = -1

Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECE 473
           WCN  Y   + W P P        CP +KG    ++ +K C+
Sbjct: 73  WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 623  RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721
            +L PP   P+   P+N    ++Y+  R++ H H
Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 623  RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721
            +L PP   P+   P+N    ++Y+  R++ H H
Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 623  RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721
            +L PP   P+   P+N    ++Y+  R++ H H
Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,998
Number of Sequences: 27780
Number of extensions: 408398
Number of successful extensions: 1055
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -