Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1105
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 31 0.64
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 31 0.64
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 30 1.5
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 30 1.5
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 30 1.5
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 30 1.5
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 29 2.6
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.5
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 629 GPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQD 733
G GG S QQP NNAT + + HQ HQ+
Sbjct: 11 GNNGGDQSQQQPTNNATLFLLQMIQQSQHQQQHQN 45
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
protein F02E9.4a protein.
Length = 1505
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 629 GPPGGAPSYQQPLNNATCASYKWARLQVHQHSHQD 733
G GG S QQP NNAT + + HQ HQ+
Sbjct: 11 GNNGGDQSQQQPTNNATLFLLQMIQQSQHQQQHQN 45
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = -1
Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
WCN Y + W P P CP +KG ++ K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = -1
Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
WCN Y + W P P CP +KG ++ K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = -1
Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
WCN Y + W P P CP +KG ++ K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = -1
Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECEMS 467
WCN Y + W P P CP +KG ++ K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = -1
Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECE 473
WCN Y + W P P CP +KG ++ +K C+
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = -1
Query: 583 WCNCVY*ICVFWTPDPGAC-----CPCIKGYQILRHQMKECE 473
WCN Y + W P P CP +KG ++ +K C+
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 623 RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721
+L PP P+ P+N ++Y+ R++ H H
Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 623 RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721
+L PP P+ P+N ++Y+ R++ H H
Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 623 RLGPPGGAPSYQQPLNNATCASYKWARLQVHQH 721
+L PP P+ P+N ++Y+ R++ H H
Sbjct: 1714 KLAPPPRPPNPISPINRGPSSNYEGIRMRAHSH 1746
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,998
Number of Sequences: 27780
Number of extensions: 408398
Number of successful extensions: 1055
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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