Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1105
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            27   0.14 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.0  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 515 NTRAACAGIRSPEYAYSVHTITPRCAAGRHDESSTGR 625
           N+RA       P+  Y+V    PRCA   +++ S  R
Sbjct: 132 NSRANTYNFDYPQVPYTVKNFHPRCAVNNYNDPSNVR 168


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -1

Query: 517 IKGYQILRHQMKECEMSDH--SW 455
           ++ Y + +HQ+KE  +  H  SW
Sbjct: 584 VQNYSLAKHQLKEAFVKAHLGSW 606


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 717 WCTWSRAHL 691
           WCTWS   L
Sbjct: 388 WCTWSEGDL 396


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 717 WCTWSRAHL 691
           WCTWS   L
Sbjct: 388 WCTWSEGDL 396


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -2

Query: 717 WCTWSRAHL 691
           WCTWS   L
Sbjct: 388 WCTWSEGDL 396


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 82  LSAIRSTLAAPRFFA 126
           L AIR+TL A  FFA
Sbjct: 461 LKAIRATLKASPFFA 475


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 82  LSAIRSTLAAPRFFA 126
           L AIR+TL A  FFA
Sbjct: 376 LKAIRATLKASPFFA 390


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 82  LSAIRSTLAAPRFFA 126
           L AIR+TL A  FFA
Sbjct: 695 LKAIRATLKASPFFA 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,905
Number of Sequences: 438
Number of extensions: 5180
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)