Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1105
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa...    33   0.26 
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa...    31   0.60 
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa...    31   0.60 
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa...    31   0.60 
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa...    30   1.4  
At4g16090.1 68417.m02439 hypothetical protein contains Pfam prof...    29   4.2  
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa...    29   4.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    28   5.6  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    27   9.7  
At5g15710.1 68418.m01837 F-box family protein unusual floral org...    27   9.7  
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    27   9.7  

>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 214

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 356 IMIGHTSCTICTRDLKISKCPCPLLATP 439
           I  GHT C +C+R+L +++  CPL   P
Sbjct: 179 IPCGHTFCRVCSRELWLNRGSCPLCNRP 206


>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 265

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 356 IMIGHTSCTICTRDLKISKCPCPLLAT 436
           I  GHT C +C+R+L + +  CPL  T
Sbjct: 230 IPCGHTFCRLCSRELWVQRGNCPLCNT 256


>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 304

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 356 IMIGHTSCTICTRDLKISKCPCPLLAT 436
           I  GHT C +C+R+L + +  CPL  T
Sbjct: 269 IPCGHTFCRLCSRELWVQRGNCPLCNT 295


>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 250

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 356 IMIGHTSCTICTRDLKISKCPCPLLAT 436
           I  GHT C +C+R+L + +  CPL  T
Sbjct: 215 IPCGHTFCRLCSRELWVQRGNCPLCNT 241


>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile:  PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 204

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 356 IMIGHTSCTICTRDLKISKCPCPL 427
           I  GHT C +C+R++ +++  CPL
Sbjct: 169 IPCGHTYCRVCSREIWMNRGTCPL 192


>At4g16090.1 68417.m02439 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 251

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 403 NLEVPLSATRDAKNSVYAMNDQTFHTPSFG 492
           N   P    +D+ + +Y+  D+ F+TPSFG
Sbjct: 165 NFNRPGGTHKDSGSVMYSKRDEKFYTPSFG 194


>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 360

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 365 GHTSCTICTRDLKISKCPCPLLAT 436
           GHT C +C+++L   K  CP+ ++
Sbjct: 328 GHTFCKLCSKELMAQKGHCPVCSS 351


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = +2

Query: 377 CTICTRDLKISKCPCPLLATPRTVCTP*MIRHFTLLHLVTKNLISFNTRAACAGIRSPEY 556
           C +C  D+ +    C     P  +  P    H   LH   K LI FN  A C  I   E+
Sbjct: 127 CDLCDFDVDLY---CAKYPPPEVIDIPETHHHKLNLH---KELIEFNCDAKCGKITGAEF 180

Query: 557 AY 562
            Y
Sbjct: 181 PY 182


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 424 RTGALRDFQVSCTYCTACMTYHDFRKQFVDTPFQFVHRTRKIMTVHL 284
           R GA     +S TY    +    F K+ V++PF+ +H +    ++ L
Sbjct: 90  RCGACGRPTLSATYYACLICEKMFHKECVESPFEIIHPSHPFHSLRL 136


>At5g15710.1 68418.m01837 F-box family protein unusual floral organs
           protein UFO - Arabidopsis thaliana, PIR:S57710
          Length = 448

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 479 LLHLVTKNLISFNTRAACAGIRS--PEYAYSVHTITPRCAAGRHDESSTGRLGPPGGAPS 652
           L+  V K+L S N+ A  A  ++   E + S   ++P   +G  + S  GR+G    +PS
Sbjct: 10  LMGSVEKSLDSGNSLACSASAKNGDEESSTSSKQVSPLKGSGSRNTSPLGRVGSRNTSPS 69

Query: 653 YQQ 661
            Q+
Sbjct: 70  RQK 72


>At4g27370.1 68417.m03929 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1126

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 721 VLVYLESCPLIACAGCIIKRLLIRRST 641
           ++V L +C L A   CI KRL +R++T
Sbjct: 453 LMVVLSTCKLQAGRDCIAKRLTLRQAT 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,229
Number of Sequences: 28952
Number of extensions: 363433
Number of successful extensions: 906
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)