Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1103
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    92   2e-20
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    90   5e-20
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   0.49 
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   2.0  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   2.6  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    24   4.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   4.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    24   4.6  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    23   6.1  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    23   6.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    23   6.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    23   8.0  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 91.9 bits (218), Expect = 2e-20
 Identities = 40/62 (64%), Positives = 49/62 (79%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC E Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL 
Sbjct: 81  KLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQ 140

Query: 182 VL 187
            L
Sbjct: 141 TL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 90.2 bits (214), Expect = 5e-20
 Identities = 38/62 (61%), Positives = 49/62 (79%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC E + PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL 
Sbjct: 78  KLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQ 137

Query: 182 VL 187
            L
Sbjct: 138 KL 139


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 175 RWSFLAEIFDDNTGAADNFPCLAIL 101
           RW +LA +F  N  A  N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 143 QHRSSRQFSLPCHPCQSCRD-QPILQAF 63
           + ++ +QF LP  PCQ+  + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 117 GKLSAAPVLSSKISARKLQR 176
           G  S+A +L+ K+ ARKLQR
Sbjct: 28  GTSSSANILNGKLLARKLQR 47


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 141 LSSKISARKLQRWMCSRTTSSRRAN 215
           L S ++ R+LQ W  ++  S RR+N
Sbjct: 70  LKSSMTPRELQIWFQNKRQSLRRSN 94


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 44  VKVDNNKKLGEWAGLCKIDKDGKARKIVG 130
           V+ +N +K  EWAGL  ID +      VG
Sbjct: 527 VRKENKRKAQEWAGL-TIDDEADLLVFVG 554


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 30  IRFHWSRLTTTKSLENGLVSARLTRMARQGKLSA 131
           +R+HWS++    +   GLV   ++ +  +G  SA
Sbjct: 258 VRYHWSQILGVVACIGGLVLLVVSDVISRGDYSA 291


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 144 TTQEQPTIFLALPSLSILQRPA 79
           T    P I    PS+S+ QRPA
Sbjct: 556 TAMPHPNITSPSPSISVTQRPA 577


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 181 IQRWSFLAEIFDDNTGAADNFPCLAILVNLAETSPFSKL 65
           I  W+F A +     GAA    C  ++   AET PF+ L
Sbjct: 166 ITPWNFPAAMITRKVGAALAAGCTVVIRPAAET-PFTAL 203


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 21  ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKI 155
           A  +   W R     + ENGL +   +R A  G + +  VLS K+
Sbjct: 117 AVQVPRQWKR-NKAWNTENGLENCANSRFAPGGDIDSFRVLSQKL 160


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +3

Query: 120  KLSAAPVLSSKISARKLQRWMCSR 191
            +++ +P++  K S+R  Q+ +CS+
Sbjct: 944  RITRSPIIGDKFSSRHGQKGICSQ 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,528
Number of Sequences: 5004
Number of extensions: 16961
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)