Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1103
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 106 2e-24
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 105 5e-24
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 1.2
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 1.2
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 1.6
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 26 3.7
02_05_1037 + 33682048-33682188,33682317-33682358,33683143-336833... 26 3.7
11_06_0179 + 20952070-20955228 25 8.6
08_02_1183 - 24998698-24998913 25 8.6
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 106 bits (255), Expect = 2e-24
Identities = 45/67 (67%), Positives = 57/67 (85%)
Frame = +2
Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFGEE+ L+
Sbjct: 70 KLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESEGLN 129
Query: 182 VLKDYLK 202
+++DY+K
Sbjct: 130 IVQDYVK 136
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 105 bits (252), Expect = 5e-24
Identities = 44/67 (65%), Positives = 57/67 (85%)
Frame = +2
Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+GEE+ L+
Sbjct: 70 KLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEESEGLN 129
Query: 182 VLKDYLK 202
+++DY+K
Sbjct: 130 IVQDYVK 136
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 38 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 169
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1759 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDPT 1802
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 38 PLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 169
PLV K GE A LC+ +K +A+ + ++KDF + T
Sbjct: 1755 PLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKDFEDAT 1798
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -2
Query: 134 SSRQFS-LPCHPCQSCRD 84
SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 136 GAADNFPCLAILVNLAE 86
GA D F CLA+ +NL E
Sbjct: 590 GAEDPFQCLAVCINLTE 606
>02_05_1037 +
33682048-33682188,33682317-33682358,33683143-33683328,
33684442-33684657,33684803-33684949,33685525-33685866,
33687257-33687361
Length = 392
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 11 QALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCV 142
QA N ++ P VK D+N W + + K GK I SCV
Sbjct: 137 QASINVYE-PKVKQDSNDLSASWIQIGSVPKVGKGVGIGAGSCV 179
>11_06_0179 + 20952070-20955228
Length = 1052
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 29 HQIPLVKVDNNKKLGEWAGLCKID 100
H IP + + N+K+G AG ++D
Sbjct: 702 HSIPSYRTNGNEKVGSPAGFIELD 725
>08_02_1183 - 24998698-24998913
Length = 71
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 110 CHPCQSCRDQPIL 72
CH + CRD+P+L
Sbjct: 56 CHASEGCRDEPLL 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,650,965
Number of Sequences: 37544
Number of extensions: 115918
Number of successful extensions: 407
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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