Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1103
         (279 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               97   2e-21
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.020
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.020
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.58 
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         27   1.8  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           27   2.3  
SB_43749| Best HMM Match : Lipase_GDSL (HMM E-Value=0.077)             27   3.1  
SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)                    27   3.1  
SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)                     27   3.1  
SB_41863| Best HMM Match : Sushi (HMM E-Value=3.2e-34)                 26   4.1  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               26   5.4  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_13712| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                25   9.4  

>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 41/50 (82%), Positives = 48/50 (96%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 151
           KLV+ALC EH IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 70  KLVEALCAEHGIPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119


>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAG 85
           +L++A C E+ IP+VKVD+++KL   AG
Sbjct: 26  RLIEAFCWEYPIPVVKVDSSRKLKTIAG 53


>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAG 85
           +L++A C E+ IP+VKVD+++KL   AG
Sbjct: 26  RLIEAFCWEYPIPVVKVDSSRKLKTIAG 53


>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 148 DDNTGAADNFPCLAILVNLAETSPFSKLF 62
           DD    +D +PC+ I+VN++ T   +K F
Sbjct: 10  DDGLTCSDVYPCVEIMVNISSTGSETKKF 38


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 SVGCAQGLPQVVELILRCNANPY 240
           S+ CA G   VVEL+L   ANPY
Sbjct: 83  SLACAGGHLAVVELLLAHGANPY 105


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 4   TCSGSVQRTSDSTXXXXXXXKAWRMGWSLQD*QGWQGKENCRLLLCCHQRFRRGNSS 174
           +C G V+R +  T          R+  +L D  GWQG  N     C  QR  R  S+
Sbjct: 218 SCVGIVERCNAPTVDLRRMCSCKRVTCTLDDWSGWQGTPNDN--QCATQRRTRTYSA 272


>SB_43749| Best HMM Match : Lipase_GDSL (HMM E-Value=0.077)
          Length = 399

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 92  KIDKDGKARKIVGCSCVVIKDFG 160
           ++ KD K +K++   CV ++DFG
Sbjct: 214 RLGKDPKTKKVMNPECVNLEDFG 236


>SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)
          Length = 676

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 163 GNSSVGCAQGLPQVVELILRCNANPYKLN 249
           G ++ G  Q +PQ+  ++ RC  + Y +N
Sbjct: 629 GGATAGAGQEVPQLQRIVARCGCDFYYVN 657


>SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)
          Length = 401

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 229 HYT*GLARRLEVVLEHIQRWSFLAEIFD 146
           HY     RR E+ L+ +Q+W  L E F+
Sbjct: 254 HYRWDKLRRAEIDLQRVQQWIKLEEAFE 281


>SB_41863| Best HMM Match : Sushi (HMM E-Value=3.2e-34)
          Length = 174

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 103 GWQGKENCRLLLCCHQRFRR-GNSSVGCAQG 192
           GW  +   R+   C+ RFRR G SS  C  G
Sbjct: 16  GWDFRHGKRIDFYCNSRFRRIGASSSTCNDG 46


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 202 LEVVLEHIQRWSFLAEIFDDNTGAADNFPCLAILVNLAETSP 77
           ++V+ + +  W  L+ +F   TG+  N   + + VNL  T+P
Sbjct: 78  VQVLTQDLYSWYDLSLLFCKPTGSGINSGFVPLAVNLLRTAP 119


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 54  TTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMCSRTTSSRRANP 218
           T+T SLE+ + S   T    +   +++PVL +  S         S  T+S  + P
Sbjct: 444 TSTPSLESSMTSNNTTLTLAEAVATSSPVLPTTTSVLTSSMEPSSMATTSTTSTP 498


>SB_13712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  GEWAGLCKIDKDGKARKIVGCS 136
           G W  +CK D +G+  +++G S
Sbjct: 110 GSWLYVCKRDSEGEGNQVMGFS 131


>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 123 LSAAPVLSSKISARKLQRWMCSRTTS 200
           +   P L  KI A K  +W CS T++
Sbjct: 630 VKVGPQLLQKIRAEKSSQWKCSGTST 655


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 140 HRSSRQFSLPC 108
           HRS+R FSLPC
Sbjct: 405 HRSNRTFSLPC 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,739,080
Number of Sequences: 59808
Number of extensions: 142346
Number of successful extensions: 408
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)