Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1103
         (279 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12 p...   114   5e-26
BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12 p...   114   5e-26
BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12 p...   114   5e-26
AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12 p...   114   5e-26
AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12 p...   114   5e-26
X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12 pro...   108   4e-24
BC034968-1|AAH34968.1|  538|Homo sapiens jub, ajuba homolog (Xen...    29   2.6  
BC007580-1|AAH07580.1|  538|Homo sapiens JUB protein protein.          29   2.6  
AY169959-1|AAO37641.1|  538|Homo sapiens ajuba protein.                29   2.6  

>BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  114 bits (274), Expect = 5e-26
 Identities = 47/67 (70%), Positives = 60/67 (89%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A D
Sbjct: 63  KLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKD 122

Query: 182 VLKDYLK 202
           V+++Y K
Sbjct: 123 VIEEYFK 129


>BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  114 bits (274), Expect = 5e-26
 Identities = 47/67 (70%), Positives = 60/67 (89%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A D
Sbjct: 63  KLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKD 122

Query: 182 VLKDYLK 202
           V+++Y K
Sbjct: 123 VIEEYFK 129


>BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  114 bits (274), Expect = 5e-26
 Identities = 47/67 (70%), Positives = 60/67 (89%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A D
Sbjct: 63  KLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKD 122

Query: 182 VLKDYLK 202
           V+++Y K
Sbjct: 123 VIEEYFK 129


>AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  114 bits (274), Expect = 5e-26
 Identities = 47/67 (70%), Positives = 60/67 (89%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A D
Sbjct: 63  KLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKD 122

Query: 182 VLKDYLK 202
           V+++Y K
Sbjct: 123 VIEEYFK 129


>AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  114 bits (274), Expect = 5e-26
 Identities = 47/67 (70%), Positives = 60/67 (89%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC EHQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A D
Sbjct: 63  KLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKD 122

Query: 182 VLKDYLK 202
           V+++Y K
Sbjct: 123 VIEEYFK 129


>X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  108 bits (259), Expect = 4e-24
 Identities = 45/67 (67%), Positives = 58/67 (86%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+AL  EHQI L+KVD+NKKLGEW GLCKID++G  RK+VGCSCVV+KD+G+E+ A D
Sbjct: 63  KLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKESQAKD 122

Query: 182 VLKDYLK 202
           V+++Y K
Sbjct: 123 VIEEYFK 129


>BC034968-1|AAH34968.1|  538|Homo sapiens jub, ajuba homolog
           (Xenopus laevis) protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 128 RQFSLPCHPCQSCRDQPILQAFCCCQP 48
           R +   C+ C+ CR Q   +  CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513


>BC007580-1|AAH07580.1|  538|Homo sapiens JUB protein protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 128 RQFSLPCHPCQSCRDQPILQAFCCCQP 48
           R +   C+ C+ CR Q   +  CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513


>AY169959-1|AAO37641.1|  538|Homo sapiens ajuba protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 128 RQFSLPCHPCQSCRDQPILQAFCCCQP 48
           R +   C+ C+ CR Q   +  CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,542,180
Number of Sequences: 237096
Number of extensions: 628830
Number of successful extensions: 1699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1325771524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)