Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1103
         (279 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    87   2e-18
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   0.65 
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    27   1.5  
Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U55856-5|AAA98023.1|  441|Caenorhabditis elegans Synaptotagmin p...    26   4.6  
U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin p...    26   4.6  
L15302-1|AAA28145.1|  441|Caenorhabditis elegans synaptotagmin I...    26   4.6  
AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical ...    26   4.6  
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr...    25   8.0  
U55370-7|AAA97998.2|  388|Caenorhabditis elegans Hypothetical pr...    25   8.0  
U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical pr...    25   8.0  
AC119287-2|AAM19064.2|  218|Caenorhabditis elegans Glutathione s...    25   8.0  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 37/65 (56%), Positives = 48/65 (73%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS  V+ ++G E     
Sbjct: 71  KLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRA 130

Query: 182 VLKDY 196
           +L DY
Sbjct: 131 ILTDY 135


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 23  NEHQIPLVKVDNNKKLGEWAGLCK 94
           N++Q+ +  V+NNKK+ +W G  K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 86  LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 193
           L K  K+ K +K+     + ++DF EETP  +  +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 21  ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 185
           +T+    + RL        G V+AR+T +A  G   A    S  ++ R    W C
Sbjct: 4   STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58


>Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical
           protein W02A11.8 protein.
          Length = 266

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 83  GLCKIDKDGKARKIVGCSCVVIKDFGEET 169
           G C I+ D    K VG +   ++DFGEET
Sbjct: 80  GKCTIEADITIIKEVGDARAKLRDFGEET 108


>U55856-5|AAA98023.1|  441|Caenorhabditis elegans Synaptotagmin
           protein 1, isoform a protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 151
           IPL K+D    + EW  +     D +A K +G  C  ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301


>U55856-4|AAK68354.1|  443|Caenorhabditis elegans Synaptotagmin
           protein 1, isoform b protein.
          Length = 443

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 151
           IPL K+D    + EW  +     D +A K +G  C  ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301


>L15302-1|AAA28145.1|  441|Caenorhabditis elegans synaptotagmin I
           protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 151
           IPL K+D    + EW  +     D +A K +G  C  ++
Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301


>AL031627-4|CAA20957.1|  230|Caenorhabditis elegans Hypothetical
           protein Y102A5C.13 protein.
          Length = 230

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 83  GLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 187
           G+CK  K+     ++GC  V++K+   +  +LD++
Sbjct: 11  GVCKSKKNTHLDSLLGCLSVLMKNSELQLDSLDII 45


>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
           protein W08D2.7 protein.
          Length = 1026

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 95  IDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 193
           IDK     ++ G      K FG + P LD ++D
Sbjct: 735 IDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQD 767


>U55370-7|AAA97998.2|  388|Caenorhabditis elegans Hypothetical
           protein K03B4.1 protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 32  QIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 166
           Q PL+K   + +     GL +IDK      +VG   VV K   E+
Sbjct: 111 QTPLLKPSKHAQYLAQQGLMRIDKQNHVVHLVGYPVVVQKMIREQ 155


>U41994-8|AAK31524.1|  752|Caenorhabditis elegans Hypothetical
           protein F59A6.4 protein.
          Length = 752

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  NKKLGEWAGLCKIDK-DGKARKIVGCSCVVIKDF 157
           NKK  +W G C +D+  G   + V C     +DF
Sbjct: 381 NKKSCDWLGKCGLDEIGGDTDRSVDCRMTGDRDF 414


>AC119287-2|AAM19064.2|  218|Caenorhabditis elegans Glutathione
           s-transferase protein35 protein.
          Length = 218

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 143 VIKDFGEETPALDVLKDYLK 202
           ++KDF E+   L  LKDY+K
Sbjct: 192 ILKDFQEKIYGLPELKDYIK 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,644,384
Number of Sequences: 27780
Number of extensions: 101661
Number of successful extensions: 329
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)