BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1103 (279 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 87 2e-18 U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 0.65 L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 1.1 AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 1.5 Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical pr... 27 2.6 U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin p... 26 4.6 U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin p... 26 4.6 L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I... 26 4.6 AL031627-4|CAA20957.1| 230|Caenorhabditis elegans Hypothetical ... 26 4.6 Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr... 25 8.0 U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical pr... 25 8.0 U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical pr... 25 8.0 AC119287-2|AAM19064.2| 218|Caenorhabditis elegans Glutathione s... 25 8.0 >U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein, small subunitprotein 12 protein. Length = 140 Score = 86.6 bits (205), Expect = 2e-18 Identities = 37/65 (56%), Positives = 48/65 (73%) Frame = +2 Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181 KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+ ++G E Sbjct: 71 KLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRA 130 Query: 182 VLKDY 196 +L DY Sbjct: 131 ILTDY 135 >U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical protein C10H11.8 protein. Length = 382 Score = 28.7 bits (61), Expect = 0.65 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +2 Query: 23 NEHQIPLVKVDNNKKLGEWAGLCK 94 N++Q+ + V+NNKK+ +W G K Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368 >L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical protein C06E1.10 protein. Length = 1148 Score = 27.9 bits (59), Expect = 1.1 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 86 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 193 L K K+ K +K+ + ++DF EETP + +D Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523 >AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spermatogenesis protein15 protein. Length = 1219 Score = 27.5 bits (58), Expect = 1.5 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +3 Query: 21 ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 185 +T+ + RL G V+AR+T +A G A S ++ R W C Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58 >Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical protein W02A11.8 protein. Length = 266 Score = 26.6 bits (56), Expect = 2.6 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 83 GLCKIDKDGKARKIVGCSCVVIKDFGEET 169 G C I+ D K VG + ++DFGEET Sbjct: 80 GKCTIEADITIIKEVGDARAKLRDFGEET 108 >U55856-5|AAA98023.1| 441|Caenorhabditis elegans Synaptotagmin protein 1, isoform a protein. Length = 441 Score = 25.8 bits (54), Expect = 4.6 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +2 Query: 35 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 151 IPL K+D + EW + D +A K +G C ++ Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301 >U55856-4|AAK68354.1| 443|Caenorhabditis elegans Synaptotagmin protein 1, isoform b protein. Length = 443 Score = 25.8 bits (54), Expect = 4.6 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +2 Query: 35 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 151 IPL K+D + EW + D +A K +G C ++ Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301 >L15302-1|AAA28145.1| 441|Caenorhabditis elegans synaptotagmin I protein. Length = 441 Score = 25.8 bits (54), Expect = 4.6 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +2 Query: 35 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 151 IPL K+D + EW + D +A K +G C ++ Sbjct: 263 IPLGKIDLGAVIEEWKDIAPPPDDKEAEKSLGDICFSLR 301 >AL031627-4|CAA20957.1| 230|Caenorhabditis elegans Hypothetical protein Y102A5C.13 protein. Length = 230 Score = 25.8 bits (54), Expect = 4.6 Identities = 10/35 (28%), Positives = 21/35 (60%) Frame = +2 Query: 83 GLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 187 G+CK K+ ++GC V++K+ + +LD++ Sbjct: 11 GVCKSKKNTHLDSLLGCLSVLMKNSELQLDSLDII 45 >Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical protein W08D2.7 protein. Length = 1026 Score = 25.0 bits (52), Expect = 8.0 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +2 Query: 95 IDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 193 IDK ++ G K FG + P LD ++D Sbjct: 735 IDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQD 767 >U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical protein K03B4.1 protein. Length = 388 Score = 25.0 bits (52), Expect = 8.0 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 32 QIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 166 Q PL+K + + GL +IDK +VG VV K E+ Sbjct: 111 QTPLLKPSKHAQYLAQQGLMRIDKQNHVVHLVGYPVVVQKMIREQ 155 >U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical protein F59A6.4 protein. Length = 752 Score = 25.0 bits (52), Expect = 8.0 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = +2 Query: 59 NKKLGEWAGLCKIDK-DGKARKIVGCSCVVIKDF 157 NKK +W G C +D+ G + V C +DF Sbjct: 381 NKKSCDWLGKCGLDEIGGDTDRSVDCRMTGDRDF 414 >AC119287-2|AAM19064.2| 218|Caenorhabditis elegans Glutathione s-transferase protein35 protein. Length = 218 Score = 25.0 bits (52), Expect = 8.0 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +2 Query: 143 VIKDFGEETPALDVLKDYLK 202 ++KDF E+ L LKDY+K Sbjct: 192 ILKDFQEKIYGLPELKDYIK 211 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,644,384 Number of Sequences: 27780 Number of extensions: 101661 Number of successful extensions: 329 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 314 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 329 length of database: 12,740,198 effective HSP length: 69 effective length of database: 10,823,378 effective search space used: 248937694 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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