Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1103
         (279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.40 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   0.53 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   0.53 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   2.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 0.40
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARK--IVGCSCV 142
           KL+  +  E    L +VD  + LGE   L   D   K +K  + GC CV
Sbjct: 564 KLIDNIKKEIYDILPEVDVEEILGEAKVLQNFDIKDKNKKVNVAGCRCV 612


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 0.53
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 39  HWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKIS 158
           HWSR  T  SL+N  +S  ++ +  Q  L   P  +S I+
Sbjct: 22  HWSRGNTWLSLDNSNMS--MSSVGPQSPLDMKPDTASLIN 59


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 0.53
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 39  HWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKIS 158
           HWSR  T  SL+N  +S  ++ +  Q  L   P  +S I+
Sbjct: 22  HWSRGNTWLSLDNSNMS--MSSVGPQSPLDMKPDTASLIN 59


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 141 TQEQPTIFLALPSL 100
           T++Q T+F+A+P +
Sbjct: 67  TEQQSTVFVAIPRI 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,465
Number of Sequences: 438
Number of extensions: 977
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)