Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1103
(279 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 101 7e-23
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 101 7e-23
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 101 7e-23
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 98 9e-22
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 98 9e-22
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 0.26
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 1.4
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 2.4
At1g51920.1 68414.m05853 expressed protein 27 2.4
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c... 26 4.3
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 25 7.5
At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to ... 25 7.5
At3g10113.1 68416.m01212 myb family transcription factor contain... 25 7.5
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family... 25 7.5
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family... 25 7.5
At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family... 25 7.5
At1g18330.1 68414.m02290 myb family transcription factor contain... 25 7.5
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 25 7.5
At2g25730.1 68415.m03084 expressed protein 25 9.9
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 101 bits (242), Expect = 7e-23
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = +2
Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+
Sbjct: 76 KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135
Query: 182 VLKDYL 199
++K +L
Sbjct: 136 IVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 101 bits (242), Expect = 7e-23
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = +2
Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+
Sbjct: 76 KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135
Query: 182 VLKDYL 199
++K +L
Sbjct: 136 IVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 101 bits (242), Expect = 7e-23
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = +2
Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+
Sbjct: 76 KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135
Query: 182 VLKDYL 199
++K +L
Sbjct: 136 IVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 97.9 bits (233), Expect = 9e-22
Identities = 40/66 (60%), Positives = 54/66 (81%)
Frame = +2
Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL
Sbjct: 76 KLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALS 135
Query: 182 VLKDYL 199
++ ++
Sbjct: 136 IVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 97.9 bits (233), Expect = 9e-22
Identities = 40/66 (60%), Positives = 54/66 (81%)
Frame = +2
Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL
Sbjct: 76 KLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALS 135
Query: 182 VLKDYL 199
++ ++
Sbjct: 136 IVNKHI 141
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 8 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 133
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 163 GNSSVGCAQGLPQVVELILRCNANPY 240
G SS+ C G ++ +++ N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 59 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 166
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 116 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRC 21
+P P S R PI A CC+P P+ S RC
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRC 62
>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
contains Pfam profiles: PF05033: Pre-SET motif, PF00856
SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
Length = 693
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 101 CQSCRDQPILQAFCCC 54
CQ+CR QP + C C
Sbjct: 458 CQNCRHQPCMHQNCTC 473
>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles:PF05495 CHY zinc
finger, PF00097 zinc finger, C3HC4 type (RING finger)
Length = 291
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 157 RRGNSSVGCAQGLPQVV 207
+RG+ S C+ G+PQVV
Sbjct: 271 QRGSDSHSCSSGMPQVV 287
>At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to
nicotianamine aminotransferase from Hordeum vulgare
[GI:6498122, GI:6469087]; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 389
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 172 SVGCAQGLPQVVELILRCNAN 234
+VGC QG+ V++ + R NAN
Sbjct: 131 TVGCNQGIEVVLQSLARPNAN 151
>At3g10113.1 68416.m01212 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 336
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 5 LVQALCNEHQIPLVKVDNNKKLGEWAGLC 91
L Q C E+ + VD N LG W C
Sbjct: 229 LKQMTCQENHYSGMLVDTNLSLGVWETFC 257
>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 394
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 103 LVNLAETSPFSKLFVVVNLDQWNL-MFVAQSLNK 5
+VN+ E S F+ L +V + W++ MF+ SL++
Sbjct: 245 IVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHR 278
>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 391
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 103 LVNLAETSPFSKLFVVVNLDQWNL-MFVAQSLNK 5
+VN+ E S F+ L +V + W++ MF+ SL++
Sbjct: 245 IVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHR 278
>At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 391
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 172 SVGCAQGLPQVVEL 213
S GCA GLP+V+E+
Sbjct: 333 SKGCADGLPEVLEI 346
>At1g18330.1 68414.m02290 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 346
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 5 LVQALCNEHQIPLVKVDNNKKLGEWAGLC 91
L Q C E+ + VD N LG W C
Sbjct: 239 LKQMTCQENHYSGMLVDTNLSLGVWETFC 267
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 199 EVVLEHIQRWSFLAEIFDDNTGAAD 125
+V +++Q W ++ I D NTG D
Sbjct: 175 DVAAQYVQGWDWICPIRDRNTGIWD 199
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +3
Query: 96 LTRMARQGKLSAAPVLSSKISARKLQRWMCSRTTSSRRANP 218
+ R+ +GKL A LS + W+ SR NP
Sbjct: 1312 VNRLIDEGKLMDALALSDRFLRNGASDWLLQLLIKSREENP 1352
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,362,401
Number of Sequences: 28952
Number of extensions: 92995
Number of successful extensions: 299
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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