BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1103 (279 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 101 7e-23 At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 101 7e-23 At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 101 7e-23 At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 98 9e-22 At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 98 9e-22 At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 0.26 At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 1.4 At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 2.4 At1g51920.1 68414.m05853 expressed protein 27 2.4 At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c... 26 4.3 At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 25 7.5 At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to ... 25 7.5 At3g10113.1 68416.m01212 myb family transcription factor contain... 25 7.5 At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family... 25 7.5 At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family... 25 7.5 At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family... 25 7.5 At1g18330.1 68414.m02290 myb family transcription factor contain... 25 7.5 At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 25 7.5 At2g25730.1 68415.m03084 expressed protein 25 9.9 >At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) Length = 144 Score = 101 bits (242), Expect = 7e-23 Identities = 44/66 (66%), Positives = 55/66 (83%) Frame = +2 Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181 KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+ Sbjct: 76 KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135 Query: 182 VLKDYL 199 ++K +L Sbjct: 136 IVKKHL 141 >At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) Length = 144 Score = 101 bits (242), Expect = 7e-23 Identities = 44/66 (66%), Positives = 55/66 (83%) Frame = +2 Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181 KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+ Sbjct: 76 KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135 Query: 182 VLKDYL 199 ++K +L Sbjct: 136 IVKKHL 141 >At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) Length = 144 Score = 101 bits (242), Expect = 7e-23 Identities = 44/66 (66%), Positives = 55/66 (83%) Frame = +2 Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181 KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+ Sbjct: 76 KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135 Query: 182 VLKDYL 199 ++K +L Sbjct: 136 IVKKHL 141 >At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar to 40S ribosomal protein S12 GI:4263712 from [Arabidopsis thaliana] Length = 144 Score = 97.9 bits (233), Expect = 9e-22 Identities = 40/66 (60%), Positives = 54/66 (81%) Frame = +2 Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181 KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL Sbjct: 76 KLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALS 135 Query: 182 VLKDYL 199 ++ ++ Sbjct: 136 IVNKHI 141 >At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar to 40S ribosomal protein S12 GI:4263712 from [Arabidopsis thaliana] Length = 144 Score = 97.9 bits (233), Expect = 9e-22 Identities = 40/66 (60%), Positives = 54/66 (81%) Frame = +2 Query: 2 KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181 KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL Sbjct: 76 KLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALS 135 Query: 182 VLKDYL 199 ++ ++ Sbjct: 136 IVNKHI 141 >At5g65130.1 68418.m08193 AP2 domain-containing transcription factor, putative similar to AP2 domain transcription factor Length = 277 Score = 29.9 bits (64), Expect = 0.26 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +2 Query: 8 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 133 ++++CN +PL +++ K E +G K +K+ + +I GC Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229 >At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein similar to beta-glucan-elicitor receptor GI:1752734 from [Glycine max] Length = 745 Score = 27.5 bits (58), Expect = 1.4 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = +1 Query: 163 GNSSVGCAQGLPQVVELILRCNANPY 240 G SS+ C G ++ +++ N NPY Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258 >At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 603 Score = 26.6 bits (56), Expect = 2.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 59 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 166 NKK L K+ KD KA K+ GCS + + + E Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481 >At1g51920.1 68414.m05853 expressed protein Length = 78 Score = 26.6 bits (56), Expect = 2.4 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 116 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRC 21 +P P S R PI A CC+P P+ S RC Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRC 62 >At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) contains Pfam profiles: PF05033: Pre-SET motif, PF00856 SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754 Length = 693 Score = 25.8 bits (54), Expect = 4.3 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 101 CQSCRDQPILQAFCCC 54 CQ+CR QP + C C Sbjct: 458 CQNCRHQPCMHQNCTC 473 >At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles:PF05495 CHY zinc finger, PF00097 zinc finger, C3HC4 type (RING finger) Length = 291 Score = 25.0 bits (52), Expect = 7.5 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +1 Query: 157 RRGNSSVGCAQGLPQVV 207 +RG+ S C+ G+PQVV Sbjct: 271 QRGSDSHSCSSGMPQVV 287 >At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II Length = 389 Score = 25.0 bits (52), Expect = 7.5 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +1 Query: 172 SVGCAQGLPQVVELILRCNAN 234 +VGC QG+ V++ + R NAN Sbjct: 131 TVGCNQGIEVVLQSLARPNAN 151 >At3g10113.1 68416.m01212 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain Length = 336 Score = 25.0 bits (52), Expect = 7.5 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +2 Query: 5 LVQALCNEHQIPLVKVDNNKKLGEWAGLC 91 L Q C E+ + VD N LG W C Sbjct: 229 LKQMTCQENHYSGMLVDTNLSLGVWETFC 257 >At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family protein contains Pfam domain PF00730: HhH-GPD superfamily base excision DNA repair protein Length = 394 Score = 25.0 bits (52), Expect = 7.5 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -3 Query: 103 LVNLAETSPFSKLFVVVNLDQWNL-MFVAQSLNK 5 +VN+ E S F+ L +V + W++ MF+ SL++ Sbjct: 245 IVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHR 278 >At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family protein contains Pfam domain PF00730: HhH-GPD superfamily base excision DNA repair protein Length = 391 Score = 25.0 bits (52), Expect = 7.5 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -3 Query: 103 LVNLAETSPFSKLFVVVNLDQWNL-MFVAQSLNK 5 +VN+ E S F+ L +V + W++ MF+ SL++ Sbjct: 245 IVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHR 278 >At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase Length = 391 Score = 25.0 bits (52), Expect = 7.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 172 SVGCAQGLPQVVEL 213 S GCA GLP+V+E+ Sbjct: 333 SKGCADGLPEVLEI 346 >At1g18330.1 68414.m02290 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain Length = 346 Score = 25.0 bits (52), Expect = 7.5 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +2 Query: 5 LVQALCNEHQIPLVKVDNNKKLGEWAGLC 91 L Q C E+ + VD N LG W C Sbjct: 239 LKQMTCQENHYSGMLVDTNLSLGVWETFC 267 >At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low similarity to mannosidase [gi:5359712] from Cellulomonas fimi Length = 944 Score = 25.0 bits (52), Expect = 7.5 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -3 Query: 199 EVVLEHIQRWSFLAEIFDDNTGAAD 125 +V +++Q W ++ I D NTG D Sbjct: 175 DVAAQYVQGWDWICPIRDRNTGIWD 199 >At2g25730.1 68415.m03084 expressed protein Length = 2464 Score = 24.6 bits (51), Expect = 9.9 Identities = 12/41 (29%), Positives = 17/41 (41%) Frame = +3 Query: 96 LTRMARQGKLSAAPVLSSKISARKLQRWMCSRTTSSRRANP 218 + R+ +GKL A LS + W+ SR NP Sbjct: 1312 VNRLIDEGKLMDALALSDRFLRNGASDWLLQLLIKSREENP 1352 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,362,401 Number of Sequences: 28952 Number of extensions: 92995 Number of successful extensions: 299 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 299 length of database: 12,070,560 effective HSP length: 69 effective length of database: 10,072,872 effective search space used: 231676056 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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