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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1103
         (279 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)           101   7e-23
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)           101   7e-23
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)           101   7e-23
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    98   9e-22
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    98   9e-22
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac...    30   0.26 
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si...    27   1.4  
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi...    27   2.4  
At1g51920.1 68414.m05853 expressed protein                             27   2.4  
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c...    26   4.3  
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa...    25   7.5  
At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to ...    25   7.5  
At3g10113.1 68416.m01212 myb family transcription factor contain...    25   7.5  
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family...    25   7.5  
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family...    25   7.5  
At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family...    25   7.5  
At1g18330.1 68414.m02290 myb family transcription factor contain...    25   7.5  
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo...    25   7.5  
At2g25730.1 68415.m03084 expressed protein                             25   9.9  

>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score =  101 bits (242), Expect = 7e-23
 Identities = 44/66 (66%), Positives = 55/66 (83%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 182 VLKDYL 199
           ++K +L
Sbjct: 136 IVKKHL 141


>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score =  101 bits (242), Expect = 7e-23
 Identities = 44/66 (66%), Positives = 55/66 (83%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 182 VLKDYL 199
           ++K +L
Sbjct: 136 IVKKHL 141


>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score =  101 bits (242), Expect = 7e-23
 Identities = 44/66 (66%), Positives = 55/66 (83%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC +H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 182 VLKDYL 199
           ++K +L
Sbjct: 136 IVKKHL 141


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 97.9 bits (233), Expect = 9e-22
 Identities = 40/66 (60%), Positives = 54/66 (81%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL 
Sbjct: 76  KLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALS 135

Query: 182 VLKDYL 199
           ++  ++
Sbjct: 136 IVNKHI 141


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 97.9 bits (233), Expect = 9e-22
 Identities = 40/66 (60%), Positives = 54/66 (81%)
 Frame = +2

Query: 2   KLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALD 181
           KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL 
Sbjct: 76  KLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALS 135

Query: 182 VLKDYL 199
           ++  ++
Sbjct: 136 IVNKHI 141


>At5g65130.1 68418.m08193 AP2 domain-containing transcription
           factor, putative similar to AP2 domain transcription
           factor
          Length = 277

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 8   VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 133
           ++++CN   +PL +++   K  E  +G  K +K+ +  +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229


>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
           similar to beta-glucan-elicitor receptor GI:1752734 from
           [Glycine max]
          Length = 745

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 163 GNSSVGCAQGLPQVVELILRCNANPY 240
           G SS+ C  G   ++ +++  N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258


>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 603

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 59  NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 166
           NKK      L K+ KD KA K+ GCS + + +   E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481


>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 116 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRC 21
           +P  P  S R  PI  A  CC+P P+ S  RC
Sbjct: 33  IPRAPISSRR--PICPACVCCEPAPLGSCCRC 62


>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
           contains Pfam profiles: PF05033: Pre-SET motif, PF00856
           SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
          Length = 693

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 101 CQSCRDQPILQAFCCC 54
           CQ+CR QP +   C C
Sbjct: 458 CQNCRHQPCMHQNCTC 473


>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles:PF05495 CHY zinc
           finger, PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 291

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 157 RRGNSSVGCAQGLPQVV 207
           +RG+ S  C+ G+PQVV
Sbjct: 271 QRGSDSHSCSSGMPQVV 287


>At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 389

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 172 SVGCAQGLPQVVELILRCNAN 234
           +VGC QG+  V++ + R NAN
Sbjct: 131 TVGCNQGIEVVLQSLARPNAN 151


>At3g10113.1 68416.m01212 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 336

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 5   LVQALCNEHQIPLVKVDNNKKLGEWAGLC 91
           L Q  C E+    + VD N  LG W   C
Sbjct: 229 LKQMTCQENHYSGMLVDTNLSLGVWETFC 257


>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 394

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 103 LVNLAETSPFSKLFVVVNLDQWNL-MFVAQSLNK 5
           +VN+ E S F+ L +V  +  W++ MF+  SL++
Sbjct: 245 IVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHR 278


>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
           protein contains Pfam domain PF00730: HhH-GPD
           superfamily base excision DNA repair protein
          Length = 391

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 103 LVNLAETSPFSKLFVVVNLDQWNL-MFVAQSLNK 5
           +VN+ E S F+ L +V  +  W++ MF+  SL++
Sbjct: 245 IVNMDEKSLFTMLTMVNGIGSWSVHMFMINSLHR 278


>At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 391

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 172 SVGCAQGLPQVVEL 213
           S GCA GLP+V+E+
Sbjct: 333 SKGCADGLPEVLEI 346


>At1g18330.1 68414.m02290 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 346

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 5   LVQALCNEHQIPLVKVDNNKKLGEWAGLC 91
           L Q  C E+    + VD N  LG W   C
Sbjct: 239 LKQMTCQENHYSGMLVDTNLSLGVWETFC 267


>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
           similarity to mannosidase [gi:5359712] from Cellulomonas
           fimi
          Length = 944

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 199 EVVLEHIQRWSFLAEIFDDNTGAAD 125
           +V  +++Q W ++  I D NTG  D
Sbjct: 175 DVAAQYVQGWDWICPIRDRNTGIWD 199


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 96   LTRMARQGKLSAAPVLSSKISARKLQRWMCSRTTSSRRANP 218
            + R+  +GKL  A  LS +        W+      SR  NP
Sbjct: 1312 VNRLIDEGKLMDALALSDRFLRNGASDWLLQLLIKSREENP 1352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,362,401
Number of Sequences: 28952
Number of extensions: 92995
Number of successful extensions: 299
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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