Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1102
         (346 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XMF0 Cluster: Putative uncharacterized protein; n=1; ...    31   4.0  
UniRef50_Q22RM3 Cluster: Leucine Rich Repeat family protein; n=2...    31   4.0  
UniRef50_Q231Q8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.9  
UniRef50_P16820 Cluster: Uncharacterized protein UL63; n=1; Huma...    30   9.2  
UniRef50_A5DC85 Cluster: ATP-dependent RNA helicase DBP9; n=4; S...    30   9.2  

>UniRef50_Q4XMF0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 74

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 122 TVTINDILCYILSRLIVNLNR*CF 193
           T+ +N+ LCYILS LI+++NR CF
Sbjct: 35  TIFLNE-LCYILSVLILHINRLCF 57


>UniRef50_Q22RM3 Cluster: Leucine Rich Repeat family protein; n=2;
           Tetrahymena thermophila SB210|Rep: Leucine Rich Repeat
           family protein - Tetrahymena thermophila SB210
          Length = 3980

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = -1

Query: 238 CQKSTAPLLKITKMPKALTIEIYNQSTKYIT*NIIYCNSQADLMILVTDLNDNL 77
           CQ      L+I+ M  + T  I NQ  KY++ N+ Y NS + L I   ++NDNL
Sbjct: 776 CQLKNLETLQISLMETSYTNNIDNQ-IKYLSLNLPYLNSLSTLDI---EINDNL 825


>UniRef50_Q231Q8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 361

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 223 APLLKITKMPKALTIEIYNQSTKYIT*NIIYCNSQADLMILVTDLNDN 80
           +P + IT++   +T   YN  T +    ++Y  S  DLM  + D  DN
Sbjct: 194 SPFVTITELGNLITRLSYNLPTVFSEKRMLYFESSVDLMQFLQDCGDN 241


>UniRef50_P16820 Cluster: Uncharacterized protein UL63; n=1; Human
           herpesvirus 5 strain AD169|Rep: Uncharacterized protein
           UL63 - Human cytomegalovirus (strain AD169) (HHV-5)
           (Human herpesvirus 5)
          Length = 129

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 224 SAFLTYIYYTIVK*ACIICFRIKSLYFLNKIFF 322
           S ++TYIYYT+    C  C R K+  +L ++ F
Sbjct: 56  SLYVTYIYYTLCTPNCRCCIRRKNSPYLYRLNF 88


>UniRef50_A5DC85 Cluster: ATP-dependent RNA helicase DBP9; n=4;
           Saccharomycetales|Rep: ATP-dependent RNA helicase DBP9 -
           Pichia guilliermondii (Yeast) (Candida guilliermondii)
          Length = 586

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -1

Query: 184 TIEIYNQSTKYIT*NIIYCNSQADLMILVTDLNDNLV 74
           T E+ NQ TK+I   ++YCNS   +  L T+++D +V
Sbjct: 116 TKELANQVTKFIEKLLVYCNSITQIN-LATNVSDQVV 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,420,426
Number of Sequences: 1657284
Number of extensions: 4364729
Number of successful extensions: 7240
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7240
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)