BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1102 (346 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886,309... 28 1.7 >03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886, 3099148-3099224,3099501-3099540,3099737-3099802, 3100305-3100706,3100777-3100888,3101445-3101530, 3101607-3101672 Length = 544 Score = 28.3 bits (60), Expect = 1.7 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = -1 Query: 271 TGLFYYCIIYVCQKSTAPLLKITKMPKALTIEIYNQSTKYIT*NIIYCNSQADLMILVTD 92 TG+ C I QK P+ K+ K+ + I K+I I N D+ ILV D Sbjct: 198 TGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWINHKKILTN---DIKILVFD 254 Query: 91 LNDNLVS 71 D++++ Sbjct: 255 EADHMLA 261 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,475,133 Number of Sequences: 37544 Number of extensions: 94520 Number of successful extensions: 129 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 129 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 494158076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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