Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1102
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0399 + 3097878-3098141,3098254-3098547,3098659-3098886,309...    28   1.7  

>03_01_0399 +
           3097878-3098141,3098254-3098547,3098659-3098886,
           3099148-3099224,3099501-3099540,3099737-3099802,
           3100305-3100706,3100777-3100888,3101445-3101530,
           3101607-3101672
          Length = 544

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 271 TGLFYYCIIYVCQKSTAPLLKITKMPKALTIEIYNQSTKYIT*NIIYCNSQADLMILVTD 92
           TG+   C I   QK   P+ K+ K+   + I       K+I    I  N   D+ ILV D
Sbjct: 198 TGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWINHKKILTN---DIKILVFD 254

Query: 91  LNDNLVS 71
             D++++
Sbjct: 255 EADHMLA 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,475,133
Number of Sequences: 37544
Number of extensions: 94520
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)