Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1102
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)                    27   5.4  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             26   7.1  
SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  

>SB_38918| Best HMM Match : DUF997 (HMM E-Value=2.3)
          Length = 860

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 289 NPKANNTGLFYYCIIYVCQKSTAPLLKITKMPKALTIEIYNQSTKYIT*NIIYCNSQADL 110
           +PK +NT      II V  K+  P++ + K    LT +      K+I   +++  +   L
Sbjct: 357 DPKVSNTSSLPNGIITVMSKANTPVINLPKESPILTFDSIEH--KFIVQLMVHLATSTTL 414

Query: 109 MI 104
           M+
Sbjct: 415 MV 416


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 104 DH*VCLTVTINDILCYIL 157
           DH +C+ V I+D++C I+
Sbjct: 468 DHVICVIVVISDVICVIV 485


>SB_10800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 943

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 73  KPNYRLSQLLRSLGLPDCYNK 135
           KP Y + QLL  + +P C  K
Sbjct: 279 KPGYNMDQLLGKVSIPQCVGK 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,374,134
Number of Sequences: 59808
Number of extensions: 132843
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)