Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1101X
         (426 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7JXC4 Cluster: LD29590p; n=9; Endopterygota|Rep: LD295...    66   2e-10
UniRef50_UPI00005156E4 Cluster: PREDICTED: similar to CG6459-PA;...    66   4e-10
UniRef50_UPI0000D5757B Cluster: PREDICTED: similar to CG6459-PA;...    65   5e-10
UniRef50_Q07021 Cluster: Complement component 1 Q subcomponent-b...    51   1e-05
UniRef50_UPI00005885A0 Cluster: PREDICTED: similar to Complement...    35   0.61 
UniRef50_Q6ZIB3 Cluster: CBS domain containing protein-like; n=3...    34   1.1  
UniRef50_UPI0000F1FFCD Cluster: PREDICTED: neural orphan nuclear...    31   7.5  
UniRef50_Q92VG0 Cluster: Conserved hypothetical membrane protein...    31   7.5  
UniRef50_UPI0000DA3F31 Cluster: PREDICTED: hypothetical protein;...    31   9.9  

>UniRef50_Q7JXC4 Cluster: LD29590p; n=9; Endopterygota|Rep: LD29590p
           - Drosophila melanogaster (Fruit fly)
          Length = 263

 Score = 66.5 bits (155), Expect = 2e-10
 Identities = 33/50 (66%), Positives = 40/50 (80%)
 Frame = +1

Query: 259 CGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV 408
           CG   +HTK ERELVEFLTEEIVAERK QK K++P+ ++GF VK  GA+V
Sbjct: 61  CGCN-VHTKCERELVEFLTEEIVAERKVQKGKTVPSTLDGFAVKLTGADV 109


>UniRef50_UPI00005156E4 Cluster: PREDICTED: similar to CG6459-PA;
           n=2; Apocrita|Rep: PREDICTED: similar to CG6459-PA -
           Apis mellifera
          Length = 267

 Score = 65.7 bits (153), Expect = 4e-10
 Identities = 28/44 (63%), Positives = 38/44 (86%)
 Frame = +1

Query: 277 HTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV 408
           H+K E+ELVEFL EEI+AE+KAQK+K++P E++GF V  DGA+V
Sbjct: 68  HSKAEKELVEFLAEEIIAEKKAQKLKTIPTELDGFKVSLDGADV 111


>UniRef50_UPI0000D5757B Cluster: PREDICTED: similar to CG6459-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG6459-PA - Tribolium castaneum
          Length = 261

 Score = 65.3 bits (152), Expect = 5e-10
 Identities = 32/44 (72%), Positives = 37/44 (84%)
 Frame = +1

Query: 277 HTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV 408
           H+K ERELVEFLTEEIV ERKAQK  +LPAE+EGF V  +G+EV
Sbjct: 65  HSKAERELVEFLTEEIVLERKAQKSVTLPAELEGFKVGLNGSEV 108


>UniRef50_Q07021 Cluster: Complement component 1 Q
           subcomponent-binding protein, mitochondrial precursor;
           n=28; Euteleostomi|Rep: Complement component 1 Q
           subcomponent-binding protein, mitochondrial precursor -
           Homo sapiens (Human)
          Length = 282

 Score = 50.8 bits (116), Expect = 1e-05
 Identities = 23/50 (46%), Positives = 34/50 (68%)
 Frame = +1

Query: 256 GCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAE 405
           GCG  +LHT G++  V+FL++EI  ERK QK K+LP    G+ ++ +G E
Sbjct: 68  GCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTE 117


>UniRef50_UPI00005885A0 Cluster: PREDICTED: similar to Complement
           component 1, q subcomponent binding protein; n=1;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           Complement component 1, q subcomponent binding protein -
           Strongylocentrotus purpuratus
          Length = 249

 Score = 35.1 bits (77), Expect = 0.61
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = +1

Query: 229 TQPFQYLQLGCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV 408
           ++P +    GC    LHT+ + +LV FL EEI  E+    + ++P +V GF V  + A++
Sbjct: 32  SRPSKTCSCGCKGACLHTEADSDLVNFLKEEIEVEQ--DSLTNVP-KVPGFEVTVNDADI 88


>UniRef50_Q6ZIB3 Cluster: CBS domain containing protein-like; n=3;
           Oryza sativa|Rep: CBS domain containing protein-like -
           Oryza sativa subsp. japonica (Rice)
          Length = 418

 Score = 34.3 bits (75), Expect = 1.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 413 NKTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 285
           N + +PSP T  PST+ GRD   C  R   +  + N   +L+P
Sbjct: 164 NPSPSPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206


>UniRef50_UPI0000F1FFCD Cluster: PREDICTED: neural orphan nuclear
           receptor NOR1 isoform 1; n=1; Danio rerio|Rep:
           PREDICTED: neural orphan nuclear receptor NOR1 isoform 1
           - Danio rerio
          Length = 575

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 356 DLTFCALRSATISSVRNSTS--SLSPFV*SAFNPQPSCKY 243
           D T C L    IS+   +TS  S + FV   F P+PSC Y
Sbjct: 36  DYTKCELSGGEISAAAATTSLPSFNVFVEGGFEPKPSCLY 75


>UniRef50_Q92VG0 Cluster: Conserved hypothetical membrane protein;
           n=2; Sinorhizobium|Rep: Conserved hypothetical membrane
           protein - Rhizobium meliloti (Sinorhizobium meliloti)
          Length = 430

 Score = 31.5 bits (68), Expect = 7.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 357 RLDLLCFAFSNYFFCQELYQFSFTFRVKRLQPAAELQVLEWLCS 226
           R   L F FS++FFC  L+    T R+ R +P  +   + WLC+
Sbjct: 46  RFSELFFTFSDFFFCLSLFLLLITGRI-RSRPLEQTTSI-WLCA 87


>UniRef50_UPI0000DA3F31 Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 273

 Score = 31.1 bits (67), Expect = 9.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 207 PWLPPACYTTIPILAARLRVEGASHER*KRTGRVPDR 317
           P LP A    +P L   +R  G +H R  R GRVP R
Sbjct: 83  PQLPTAPSPAVPALRGPVRGRGLAHARGPRGGRVPRR 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,877,306
Number of Sequences: 1657284
Number of extensions: 7823396
Number of successful extensions: 22213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22205
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20232460752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)