Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1101X
         (426 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   2.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   3.8  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    20   8.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 413  NKTSAPSPFTVKPSTSAG 360
            N  + P P T+KP+T+ G
Sbjct: 2205 NDKTKPKPTTMKPTTTIG 2222


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 123 NPLKFAVLTHVCSTLWV 73
           NP K+ ++   CST+W+
Sbjct: 300 NPHKWLLVNFDCSTMWL 316


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 176 HMSCSRRLDGTLASTSLLHNHSNTCSSAAG*RRFTRKVKENW*SS*Q 316
           H+S       T+AS +  ++ +++  S A    FT +   +W SS Q
Sbjct: 194 HVSTGSTSSPTIASATYTNSANSSIWSPASIDSFTLEQHRSWCSSSQ 240


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 150 FTAVCVRLTNPLK 112
           +  VCV+L NP K
Sbjct: 330 YPEVCVKLANPQK 342


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 196 PSRAAHVPYTPSKVAFHSRL 137
           P  A+H+PY  + VA  S L
Sbjct: 280 PIGASHLPYFAAAVAAASNL 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,528
Number of Sequences: 336
Number of extensions: 2006
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)