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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1101X
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    27   0.92 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    26   2.8  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   4.9  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   4.9  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   4.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   6.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    24   8.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.6  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    24   8.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   8.6  

>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +1

Query: 283 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGD 396
           K ERE+ E L  E+    K   V +LPA V   T KGD
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGD 181


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +1

Query: 175 AHELLSKVRWDPGFHQLATQPFQYLQLGCGLKALHTKGERELVEFLTEEIVAERKAQKVK 354
           A E + K  +  G H+L     +          L  K ERE+ E    EIV   K+    
Sbjct: 99  ASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEH 158

Query: 355 SLPAEVEGFTVKGD 396
              AE+ G  + G+
Sbjct: 159 LQKAELMGSQIGGE 172


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 150 FTA-VCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPA 43
           FTA VCV   NPL+ ++   V  ++ + +T P++F A
Sbjct: 101 FTAWVCV---NPLEKSIFGKVAFSVTIGITCPIVFIA 134


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 150 FTAVCVRLTN-PLKFAVLTHVCSTLWVALTMPL 55
           FT +  +  N P+   +   VCS  W+ L+ PL
Sbjct: 257 FTPILYKTNNNPIILPITVTVCSCWWLILSTPL 289


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 321 FFCQELYQFSFTFRVKRL 268
           F CQ LY+FS +FR KR+
Sbjct: 2   FSCQSLYKFSHSFR-KRI 18


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 262 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEG 378
           G+   +T+ +  + +F+  E++    A  ++S+P+ V+G
Sbjct: 713 GIYMDYTQPQIPIDDFINRELIQFSMADNIRSIPSVVDG 751


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -2

Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQPSCKY 243
           SAPSP T  PS+++ R  +    + A    + +   S      + F     C+Y
Sbjct: 60  SAPSPSTSSPSSASSRSQSKYVRKEALPPQLFHHLDSAKDKALTTFEEIQECQY 113


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 383  VKPSTSAGRDLTFCALRSATISSVRNST 300
            V  S+++G ++   +  SA ISS++NST
Sbjct: 1365 VNASSTSGMNMPISSSISAKISSIQNST 1392


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 413 NKTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 294
           NK+++PS   + P+ S  R   F   R+A IS   +  SS
Sbjct: 155 NKSASPSSSVISPAASLNR---FQTPRAAAISKRESGVSS 191


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 407 TSAPSPFTVKPST--SAGRDLTFCALRSATISSVRNSTSSLSP 285
           TS+    TV  ST  ++    T     SAT SS + +TSSL P
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLP 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,427
Number of Sequences: 5004
Number of extensions: 33124
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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