Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1101X
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 0.92
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 2.8
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 4.9
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 4.9
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 4.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 6.5
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 8.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 24 8.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 24 8.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 8.6
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 0.92
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 283 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGD 396
K ERE+ E L E+ K V +LPA V T KGD
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGD 181
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 2.8
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +1
Query: 175 AHELLSKVRWDPGFHQLATQPFQYLQLGCGLKALHTKGERELVEFLTEEIVAERKAQKVK 354
A E + K + G H+L + L K ERE+ E EIV K+
Sbjct: 99 ASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEH 158
Query: 355 SLPAEVEGFTVKGD 396
AE+ G + G+
Sbjct: 159 LQKAELMGSQIGGE 172
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 4.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 150 FTA-VCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPA 43
FTA VCV NPL+ ++ V ++ + +T P++F A
Sbjct: 101 FTAWVCV---NPLEKSIFGKVAFSVTIGITCPIVFIA 134
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 150 FTAVCVRLTN-PLKFAVLTHVCSTLWVALTMPL 55
FT + + N P+ + VCS W+ L+ PL
Sbjct: 257 FTPILYKTNNNPIILPITVTVCSCWWLILSTPL 289
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 321 FFCQELYQFSFTFRVKRL 268
F CQ LY+FS +FR KR+
Sbjct: 2 FSCQSLYKFSHSFR-KRI 18
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 6.5
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +1
Query: 262 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEG 378
G+ +T+ + + +F+ E++ A ++S+P+ V+G
Sbjct: 713 GIYMDYTQPQIPIDDFINRELIQFSMADNIRSIPSVVDG 751
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -2
Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQPSCKY 243
SAPSP T PS+++ R + + A + + S + F C+Y
Sbjct: 60 SAPSPSTSSPSSASSRSQSKYVRKEALPPQLFHHLDSAKDKALTTFEEIQECQY 113
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 383 VKPSTSAGRDLTFCALRSATISSVRNST 300
V S+++G ++ + SA ISS++NST
Sbjct: 1365 VNASSTSGMNMPISSSISAKISSIQNST 1392
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 413 NKTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 294
NK+++PS + P+ S R F R+A IS + SS
Sbjct: 155 NKSASPSSSVISPAASLNR---FQTPRAAAISKRESGVSS 191
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 8.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 407 TSAPSPFTVKPST--SAGRDLTFCALRSATISSVRNSTSSLSP 285
TS+ TV ST ++ T SAT SS + +TSSL P
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLP 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,427
Number of Sequences: 5004
Number of extensions: 33124
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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