BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1101X (426 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 0.92 SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 2.8 SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 25 4.9 SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 4.9 SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 4.9 SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 6.5 SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 8.6 SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 24 8.6 SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 24 8.6 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 8.6 >SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 27.5 bits (58), Expect = 0.92 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = +1 Query: 283 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGD 396 K ERE+ E L E+ K V +LPA V T KGD Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGD 181 >SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 25.8 bits (54), Expect = 2.8 Identities = 20/74 (27%), Positives = 29/74 (39%) Frame = +1 Query: 175 AHELLSKVRWDPGFHQLATQPFQYLQLGCGLKALHTKGERELVEFLTEEIVAERKAQKVK 354 A E + K + G H+L + L K ERE+ E EIV K+ Sbjct: 99 ASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEH 158 Query: 355 SLPAEVEGFTVKGD 396 AE+ G + G+ Sbjct: 159 LQKAELMGSQIGGE 172 >SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 25.0 bits (52), Expect = 4.9 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -1 Query: 150 FTA-VCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPA 43 FTA VCV NPL+ ++ V ++ + +T P++F A Sbjct: 101 FTAWVCV---NPLEKSIFGKVAFSVTIGITCPIVFIA 134 >SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosaccharomyces pombe|chr 1|||Manual Length = 529 Score = 25.0 bits (52), Expect = 4.9 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = -1 Query: 150 FTAVCVRLTN-PLKFAVLTHVCSTLWVALTMPL 55 FT + + N P+ + VCS W+ L+ PL Sbjct: 257 FTPILYKTNNNPIILPITVTVCSCWWLILSTPL 289 >SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 805 Score = 25.0 bits (52), Expect = 4.9 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 321 FFCQELYQFSFTFRVKRL 268 F CQ LY+FS +FR KR+ Sbjct: 2 FSCQSLYKFSHSFR-KRI 18 >SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual Length = 1485 Score = 24.6 bits (51), Expect = 6.5 Identities = 9/39 (23%), Positives = 23/39 (58%) Frame = +1 Query: 262 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEG 378 G+ +T+ + + +F+ E++ A ++S+P+ V+G Sbjct: 713 GIYMDYTQPQIPIDDFINRELIQFSMADNIRSIPSVVDG 751 >SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 798 Score = 24.2 bits (50), Expect = 8.6 Identities = 14/54 (25%), Positives = 23/54 (42%) Frame = -2 Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQPSCKY 243 SAPSP T PS+++ R + + A + + S + F C+Y Sbjct: 60 SAPSPSTSSPSSASSRSQSKYVRKEALPPQLFHHLDSAKDKALTTFEEIQECQY 113 >SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase Fab1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1932 Score = 24.2 bits (50), Expect = 8.6 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = -2 Query: 383 VKPSTSAGRDLTFCALRSATISSVRNST 300 V S+++G ++ + SA ISS++NST Sbjct: 1365 VNASSTSGMNMPISSSISAKISSIQNST 1392 >SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr 3|||Manual Length = 736 Score = 24.2 bits (50), Expect = 8.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 413 NKTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 294 NK+++PS + P+ S R F R+A IS + SS Sbjct: 155 NKSASPSSSVISPAASLNR---FQTPRAAAISKRESGVSS 191 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 24.2 bits (50), Expect = 8.6 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -2 Query: 407 TSAPSPFTVKPST--SAGRDLTFCALRSATISSVRNSTSSLSP 285 TS+ TV ST ++ T SAT SS + +TSSL P Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLP 283 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,687,427 Number of Sequences: 5004 Number of extensions: 33124 Number of successful extensions: 101 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 101 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 152416050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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