Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1101X
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1354 - 26337628-26338540,26339638-26339981 34 0.042
07_03_1490 - 26941322-26941417,26941850-26942377,26944590-269448... 29 2.1
07_03_1488 - 26925166-26925729,26927946-26928184,26929247-269296... 29 2.1
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 29 2.1
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 29 2.1
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286... 27 4.8
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732... 27 6.3
08_02_0287 + 15347145-15349604 27 6.3
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 27 6.3
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 27 6.3
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 34.3 bits (75), Expect = 0.042
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 413 NKTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 285
N + +PSP T PST+ GRD C R + + N +L+P
Sbjct: 164 NPSPSPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206
>07_03_1490 -
26941322-26941417,26941850-26942377,26944590-26944828,
26945891-26946318,26946728-26946837
Length = 466
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +1
Query: 187 LSKVRWDPGFHQLATQPFQYLQLGCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPA 366
+S+V+ D + +L +Q ++ + G+K + T+G E+ + + +V +
Sbjct: 48 ISRVKGDESYRRLPSQEKKHTAITQGMKTIDTRGTILEARAGDEKSNRDAASSEVSYIKY 107
Query: 367 EVEGFTVKGDGAE 405
+V G + K DG +
Sbjct: 108 DVLGQSAKQDGCD 120
>07_03_1488 -
26925166-26925729,26927946-26928184,26929247-26929674,
26930084-26930193
Length = 446
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +1
Query: 187 LSKVRWDPGFHQLATQPFQYLQLGCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPA 366
+S+V+ D + +L +Q ++ + G+K + T+G E+ + + +V +
Sbjct: 48 ISRVKGDESYRRLPSQEKKHTAITQGMKTIDTRGTILEARAGDEKSNRDAASSEVSYIKY 107
Query: 367 EVEGFTVKGDGAE 405
+V G + K DG +
Sbjct: 108 DVLGQSAKQDGCD 120
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 270 LQPAAELQVLEWLCSKL---VEARVPSNLREQLMCHIPLVKSRFTAVCV 133
L+PA +QVL LC L + + S + +Q++ IP + + T +C+
Sbjct: 471 LEPAISIQVLSLLCLSLSVYPKTNLFSRISKQVLSWIPWICKQTTKICM 519
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 28.7 bits (61), Expect = 2.1
Identities = 22/73 (30%), Positives = 27/73 (36%)
Frame = -3
Query: 349 PSVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRAASIGMVV*QAGGSQGPI*PSRAAHVPY 170
P V CV FL G+L H + SIG+ + A G G I H
Sbjct: 400 PPVFCVITEFLSGGSLRTFLHKQEHKSLPLEKIISIGLDI--ANGI-GYIHSQGVVHRDV 456
Query: 169 TPSKVAFHSRLCA 131
P + F S CA
Sbjct: 457 KPENIIFDSEFCA 469
>03_01_0369 -
2863159-2863491,2864149-2864214,2865045-2865140,
2865530-2865632,2865771-2865838,2866570-2866712,
2867050-2867242,2867602-2867640,2867742-2867807,
2868617-2869651
Length = 713
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISS 315
+ PS + + + GR LTF LRSA +S+
Sbjct: 44 ACPSAVALADAAAGGRALTFAELRSAVLST 73
>11_03_0177 + 11269754-11270320,11271701-11272180,11272663-11273292,
11273377-11273443,11273510-11273620,11273696-11275206
Length = 1121
Score = 27.1 bits (57), Expect = 6.3
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 175 AHELLSKVRWDPGFHQLATQPFQY---LQLGCGLKALHTKGERELVEFLTEEIVAERKAQ 345
A E+ SKV P FHQL P ++ + LG + ++ + V E K +
Sbjct: 941 AMEVFSKVPQRPNFHQLQQHPPEFREGIALGLMYSFTNLAESINMLNVHDDNAVFEHKMR 1000
Query: 346 KVKSLPAEVEGFTVK 390
+ L E +GF V+
Sbjct: 1001 CISVL--EADGFDVR 1013
>08_02_0287 + 15347145-15349604
Length = 819
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 302 TSSLSPFV*SAFNPQPSCKYWNGCVASWWKPGSHLTFESSSC 177
T+ +S ++ ++FN + +WN A W G T +SC
Sbjct: 291 TTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSC 332
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 298 LVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV 408
LV F+ ++ E K + ++ L E+E F + +G+EV
Sbjct: 461 LVGFIFTLLLPESKGKSLEDLTGEIEEFQEEDEGSEV 497
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 187 AAHVPYTPSKVAFHSRLCATNQPA*VRSFNACLQH 83
A HVP TP+K++ C + +R FNA +QH
Sbjct: 251 ADHVPQTPNKISEDMIKCIASIYIRIRDFNA-VQH 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,770
Number of Sequences: 37544
Number of extensions: 224303
Number of successful extensions: 595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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