Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1101X
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        28   2.8  
SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)                    28   3.7  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          27   4.9  
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)            27   6.5  
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  27   6.5  
SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 198 NLREQLMCHIPLVKSRFTAVCVRLTNPLK 112
           N++EQ++  +P+  +RF +VC  L N LK
Sbjct: 841 NMKEQMLSMVPV--ARFESVCEELNNALK 867


>SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)
          Length = 267

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -1

Query: 408 NFSTVSLYSKAFDFSRERLDLLCFAFSNYFFCQELYQF 295
           +FST+ ++S    +S   ++   F F +  +C++L++F
Sbjct: 101 HFSTLLVFSNILMYSNSAINPFIFVFLHSRYCKDLFRF 138


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
 Frame = +1

Query: 208 PGFHQLATQPFQYLQLGCGLKALHTK----GERELVEFLTEEIVA 330
           PG H+L++  F+YLQ+  G + L TK    G++E   ++TE +++
Sbjct: 762 PG-HRLSSAAFEYLQVDLGSEKLITKVSTQGKQEFDFWVTEYVLS 805


>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
          Length = 445

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +1

Query: 220 QLATQPFQYLQLGCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDG 399
           QL     ++  +   L+A+H + E   VEF    +  E    +++++P ++E   V+ + 
Sbjct: 286 QLEAMHVEFEAMHVQLEAMHVQFEAMHVEFEAMHVEFEAMHVQLEAMPVQLEAMPVQFEA 345

Query: 400 AEVLF 414
             V F
Sbjct: 346 MPVQF 350


>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 407 TSAPSPFTVKPSTSAGRDLTFCALR-SATISSVRNSTSSLSPFV*SAFNP 261
           TS P+PFTV        D+T C L  S    +V  S   L+P++  A  P
Sbjct: 318 TSLPNPFTVYHDDVGIIDVTTCCLSGSPPGEAVNTSCELLTPWLDKALIP 367


>SB_59148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 275 SAFNPQ-PSCKYWNGCVASWWKPGSHLT 195
           S  NP  P+ K+W+GC    W P  HL+
Sbjct: 342 SRVNPTAPAMKFWSGCYLR-WLPTVHLS 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,836
Number of Sequences: 59808
Number of extensions: 258571
Number of successful extensions: 1139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)