Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1101X
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   1.8  
AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical...    28   3.2  
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family ...    27   7.4  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    26   9.8  
AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical ...    26   9.8  
AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    26   9.8  

>AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6b protein.
          Length = 843

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 258 AELQVLEWLCSKLVEAR--VPSNLREQLMCHIPLVKSRFTA 142
           A++ +LE++CSK+   +  +P N +    C + LV S+FTA
Sbjct: 710 ADMSILEFVCSKINPEKIVIPGNTKLSQKCLVSLV-SQFTA 749


>AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6a protein.
          Length = 841

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 258 AELQVLEWLCSKLVEAR--VPSNLREQLMCHIPLVKSRFTA 142
           A++ +LE++CSK+   +  +P N +    C + LV S+FTA
Sbjct: 710 ADMSILEFVCSKINPEKIVIPGNTKLSQKCLVSLV-SQFTA 749


>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
 Frame = -1

Query: 330 SNYFFCQ-ELYQFSFTFRVKRLQPAAELQ--VLEWLC-----SKLVEARVPSNLREQLMC 175
           SN+  C  +    S  F V RL P   +   +L W+      SK+V+A V     +Q++ 
Sbjct: 2   SNFSICSLDHLNSSVLFLVFRLVPLLSIPSYILAWVFITRNKSKVVQA-VKKLYLKQMLI 60

Query: 174 HIPLVKSRFTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPAY*T*C 28
           +   V    T +C  L  P+    +T + +TL + + +PL+   +   C
Sbjct: 61  NFMSVILLCTVICPLLIPPIPGYFMTGLLATLRLNVALPLVIMTHVVLC 109


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 150 FTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIF 49
           F  VC  LTN +K  V  H C+     L + L+F
Sbjct: 27  FAGVCFSLTNTVKHCVEQHACTNDGKYLVIALVF 60


>AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical
           protein Y45F10B.5 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/78 (21%), Positives = 32/78 (41%)
 Frame = -1

Query: 333 FSNYFFCQELYQFSFTFRVKRLQPAAELQVLEWLCSKLVEARVPSNLREQLMCHIPLVKS 154
           F  ++F    +QF F   + RL P    Q    +C+K ++  +P       +    L+ +
Sbjct: 115 FYTFYFTYVSWQFPFLLSILRLIPLYYPQKHNEVCAKTIKFAIPFIYLYPFIFGFSLIPA 174

Query: 153 RFTAVCVRLTNPLKFAVL 100
                C +L  P +F  +
Sbjct: 175 --VGTCRQLLGPYQFGAI 190


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 262 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGD 396
           G K    K  REL     + I AE+K +++K L A+V+    KG+
Sbjct: 823 GTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAKVDYEKQKGE 867


>Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical
           protein T01E8.6 protein.
          Length = 199

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 18/74 (24%), Positives = 25/74 (33%)
 Frame = -2

Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQPSCKYWNGCVA 225
           S P+P   KPS+    + T  A                 P+   A       +Y      
Sbjct: 29  STPAPEPAKPSSEETTESTEPATSVEDAGEPMKEKRITQPYSSEALTKLKLDQYPLYVER 88

Query: 224 SWWKPGSHLTFESS 183
            WWK G  +TF +S
Sbjct: 89  EWWKTGKRMTFWAS 102


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical protein
            ZK675.1 protein.
          Length = 1405

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 323  ISSVRNSTSSLSPFV*SAFNPQPSCKYWNGCVASW 219
            I + R S  S S +V    N +PS KYW G +  W
Sbjct: 972  IDNYRQSIGS-SKYVIKNKNEEPSEKYWLGLMRDW 1005


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 300
           S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 475 SSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 300
           S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 682 SSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 300
           S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 682 SSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716


>U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family
           protein 2 protein.
          Length = 667

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 323 ISSVRNSTSSLSPFV*SAFNPQPSCKYWNGCVASW 219
           I + R S  S S +V    N +PS KYW G +  W
Sbjct: 405 IDNYRQSIGS-SKYVIKNKNEEPSEKYWLGLMRDW 438


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 407 TSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 294
           T+APS  T  PS+S+     T  +  S+T SS ++STS+
Sbjct: 493 TTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 407 TSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 294
           T+APS  T  PS+S+     T  +  S+T SS ++STS+
Sbjct: 493 TTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531


>AF125448-8|AAD12813.2|  334|Caenorhabditis elegans Hypothetical
           protein H14E04.1 protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 244 YLQLGCGLKALHTKGERELVEFLTEEIVAERK 339
           +L+  CG+ +LHT+ E E      E  V ER+
Sbjct: 219 HLEYACGMPSLHTQSEVEAAAEKWEMPVVERE 250


>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 125 VSRTQTAVKRDFTRGIWHMSCSRRLDGTLASTSLLHNHSNTCSS 256
           +S   T   +DF       +C R    T AS+S   + S+TC+S
Sbjct: 74  ISICTTVGMQDFVNTYCQRTCGRCPSSTTASSSSTASSSSTCTS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,436,078
Number of Sequences: 27780
Number of extensions: 188766
Number of successful extensions: 562
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)