BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1101X (426 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF106589-7|AAN73853.1| 843|Caenorhabditis elegans Hypothetical ... 29 1.4 AF106589-6|AAN73852.1| 841|Caenorhabditis elegans Hypothetical ... 29 1.4 Z92812-7|CAB07281.2| 341|Caenorhabditis elegans Hypothetical pr... 29 1.8 AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical... 29 1.8 AL021487-13|CAA16356.3| 326|Caenorhabditis elegans Hypothetical... 28 3.2 AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 27 4.3 Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical pr... 27 7.4 Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr... 27 7.4 U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 7.4 U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 7.4 U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 7.4 U23176-2|AAC46717.2| 667|Caenorhabditis elegans Patched family ... 27 7.4 Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 26 9.8 Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 26 9.8 AF125448-8|AAD12813.2| 334|Caenorhabditis elegans Hypothetical ... 26 9.8 AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical ... 26 9.8 >AF106589-7|AAN73853.1| 843|Caenorhabditis elegans Hypothetical protein Y44E3A.6b protein. Length = 843 Score = 29.1 bits (62), Expect = 1.4 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = -1 Query: 258 AELQVLEWLCSKLVEAR--VPSNLREQLMCHIPLVKSRFTA 142 A++ +LE++CSK+ + +P N + C + LV S+FTA Sbjct: 710 ADMSILEFVCSKINPEKIVIPGNTKLSQKCLVSLV-SQFTA 749 >AF106589-6|AAN73852.1| 841|Caenorhabditis elegans Hypothetical protein Y44E3A.6a protein. Length = 841 Score = 29.1 bits (62), Expect = 1.4 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = -1 Query: 258 AELQVLEWLCSKLVEAR--VPSNLREQLMCHIPLVKSRFTA 142 A++ +LE++CSK+ + +P N + C + LV S+FTA Sbjct: 710 ADMSILEFVCSKINPEKIVIPGNTKLSQKCLVSLV-SQFTA 749 >Z92812-7|CAB07281.2| 341|Caenorhabditis elegans Hypothetical protein T03E6.8 protein. Length = 341 Score = 28.7 bits (61), Expect = 1.8 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 8/109 (7%) Frame = -1 Query: 330 SNYFFCQ-ELYQFSFTFRVKRLQPAAELQ--VLEWLC-----SKLVEARVPSNLREQLMC 175 SN+ C + S F V RL P + +L W+ SK+V+A V +Q++ Sbjct: 2 SNFSICSLDHLNSSVLFLVFRLVPLLSIPSYILAWVFITRNKSKVVQA-VKKLYLKQMLI 60 Query: 174 HIPLVKSRFTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPAY*T*C 28 + V T +C L P+ +T + +TL + + +PL+ + C Sbjct: 61 NFMSVILLCTVICPLLIPPIPGYFMTGLLATLRLNVALPLVIMTHVVLC 109 >AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical protein Y39G10AR.5 protein. Length = 917 Score = 28.7 bits (61), Expect = 1.8 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -1 Query: 150 FTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIF 49 F VC LTN +K V H C+ L + L+F Sbjct: 27 FAGVCFSLTNTVKHCVEQHACTNDGKYLVIALVF 60 >AL021487-13|CAA16356.3| 326|Caenorhabditis elegans Hypothetical protein Y45F10B.5 protein. Length = 326 Score = 27.9 bits (59), Expect = 3.2 Identities = 17/78 (21%), Positives = 32/78 (41%) Frame = -1 Query: 333 FSNYFFCQELYQFSFTFRVKRLQPAAELQVLEWLCSKLVEARVPSNLREQLMCHIPLVKS 154 F ++F +QF F + RL P Q +C+K ++ +P + L+ + Sbjct: 115 FYTFYFTYVSWQFPFLLSILRLIPLYYPQKHNEVCAKTIKFAIPFIYLYPFIFGFSLIPA 174 Query: 153 RFTAVCVRLTNPLKFAVL 100 C +L P +F + Sbjct: 175 --VGTCRQLLGPYQFGAI 190 >AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical protein K09F6.3 protein. Length = 1360 Score = 27.5 bits (58), Expect = 4.3 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +1 Query: 262 GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGD 396 G K K REL + I AE+K +++K L A+V+ KG+ Sbjct: 823 GTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAKVDYEKQKGE 867 >Z48809-3|CAA88746.2| 199|Caenorhabditis elegans Hypothetical protein T01E8.6 protein. Length = 199 Score = 26.6 bits (56), Expect = 7.4 Identities = 18/74 (24%), Positives = 25/74 (33%) Frame = -2 Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQPSCKYWNGCVA 225 S P+P KPS+ + T A P+ A +Y Sbjct: 29 STPAPEPAKPSSEETTESTEPATSVEDAGEPMKEKRITQPYSSEALTKLKLDQYPLYVER 88 Query: 224 SWWKPGSHLTFESS 183 WWK G +TF +S Sbjct: 89 EWWKTGKRMTFWAS 102 >Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical protein ZK675.1 protein. Length = 1405 Score = 26.6 bits (56), Expect = 7.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 323 ISSVRNSTSSLSPFV*SAFNPQPSCKYWNGCVASW 219 I + R S S S +V N +PS KYW G + W Sbjct: 972 IDNYRQSIGS-SKYVIKNKNEEPSEKYWLGLMRDW 1005 >U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical protein K06A9.1c protein. Length = 825 Score = 26.6 bits (56), Expect = 7.4 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -2 Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 300 S+PSP ++ PSTS LT S+T SS ST Sbjct: 475 SSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509 >U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical protein K06A9.1a protein. Length = 1032 Score = 26.6 bits (56), Expect = 7.4 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -2 Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 300 S+PSP ++ PSTS LT S+T SS ST Sbjct: 682 SSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716 >U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein K06A9.1b protein. Length = 2232 Score = 26.6 bits (56), Expect = 7.4 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -2 Query: 404 SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 300 S+PSP ++ PSTS LT S+T SS ST Sbjct: 682 SSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716 >U23176-2|AAC46717.2| 667|Caenorhabditis elegans Patched family protein 2 protein. Length = 667 Score = 26.6 bits (56), Expect = 7.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 323 ISSVRNSTSSLSPFV*SAFNPQPSCKYWNGCVASW 219 I + R S S S +V N +PS KYW G + W Sbjct: 405 IDNYRQSIGS-SKYVIKNKNEEPSEKYWLGLMRDW 438 >Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein ZK945.9 protein. Length = 3178 Score = 26.2 bits (55), Expect = 9.8 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 407 TSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 294 T+APS T PS+S+ T + S+T SS ++STS+ Sbjct: 493 TTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531 >Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical protein ZK945.9 protein. Length = 3178 Score = 26.2 bits (55), Expect = 9.8 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 407 TSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 294 T+APS T PS+S+ T + S+T SS ++STS+ Sbjct: 493 TTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531 >AF125448-8|AAD12813.2| 334|Caenorhabditis elegans Hypothetical protein H14E04.1 protein. Length = 334 Score = 26.2 bits (55), Expect = 9.8 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 244 YLQLGCGLKALHTKGERELVEFLTEEIVAERK 339 +L+ CG+ +LHT+ E E E V ER+ Sbjct: 219 HLEYACGMPSLHTQSEVEAAAEKWEMPVVERE 250 >AF016445-9|AAC69061.1| 156|Caenorhabditis elegans Hypothetical protein T05B4.13 protein. Length = 156 Score = 26.2 bits (55), Expect = 9.8 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +2 Query: 125 VSRTQTAVKRDFTRGIWHMSCSRRLDGTLASTSLLHNHSNTCSS 256 +S T +DF +C R T AS+S + S+TC+S Sbjct: 74 ISICTTVGMQDFVNTYCQRTCGRCPSSTTASSSSTASSSSTCTS 117 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,436,078 Number of Sequences: 27780 Number of extensions: 188766 Number of successful extensions: 562 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 543 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 561 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 703342068 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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