Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1101X
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.8  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   7.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 366 SRERLDLLCFAFSNYFFCQELYQ 298
           + E +D LC    ++  C E+Y+
Sbjct: 459 TEESVDALCNTLHHWHHCPEIYK 481


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +1

Query: 193 KVRWDPGF 216
           K+ WDPGF
Sbjct: 683 KIEWDPGF 690


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 RVPDRRNSC*TQSTEGQVS 359
           R P RRNSC +Q    ++S
Sbjct: 402 RRPSRRNSCESQMMGDEMS 420


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 44 LIELNVHFSKFF 9
          LI  N H+SKFF
Sbjct: 49 LIGANEHYSKFF 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,104
Number of Sequences: 438
Number of extensions: 2369
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)