Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1101X
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28660.1 68415.m03484 copper-binding family protein similar t...    30   0.57 
At3g25460.1 68416.m03165 F-box family protein contains Pfam PF00...    29   1.7  
At3g27020.1 68416.m03380 oligopeptide transporter OPT family pro...    27   5.3  
At1g78760.1 68414.m09179 F-box family protein contains F-box dom...    27   7.0  
At1g68260.1 68414.m07797 thioesterase family protein contains Pf...    27   7.0  
At1g68330.1 68414.m07805 expressed protein                             26   9.3  

>At2g28660.1 68415.m03484 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 265

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 419 C*NKTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSL 291
           C N   +PS F  K +++ G D+      SA +S +R S SSL
Sbjct: 69  CRNSFESPSGFRPKIASARGSDVQIRRKSSADVSDLRRSRSSL 111


>At3g25460.1 68416.m03165 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 361

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -1

Query: 408 NFSTVSLYSKAFDFSRERLDLLCFAFS-NYFFCQELYQFSFTFRVKRLQPAAELQVLEWL 232
           N     L+   FD++ ER + LC  +   YF    L           LQP+   +   W+
Sbjct: 211 NDKPCDLFLICFDYTTERFERLCLPYQIPYFRNTSLSVVKEEKLSVLLQPSLTSKTQIWV 270

Query: 231 CSKLVEARVPS 199
            +K+ EA+V S
Sbjct: 271 TNKIGEAKVLS 281


>At3g27020.1 68416.m03380 oligopeptide transporter OPT family
           protein similar to iron-phytosiderophore transporter
           protein yellow stripe 1 [Zea mays] GI:10770865; contains
           Pfam profile PF03169: OPT oligopeptide transporter
           protein
          Length = 676

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 171 IPLVKSRFTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPA---Y*T*CSLF 19
           I LVK +   V ++   PL+FA+  +V        T+P+IFP    Y   CS F
Sbjct: 372 ILLVKKKRDEVFLKDRIPLEFAIAGYVGLAAISTATIPIIFPPLKWYFVLCSYF 425


>At1g78760.1 68414.m09179 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 452

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 334 VQQLFLLSGTLPVLFHLSCEAPSTRS 257
           V++LF+ S TL V+  L CE P  R+
Sbjct: 297 VKKLFISSHTLEVIHDLGCELPLFRN 322


>At1g68260.1 68414.m07797 thioesterase family protein contains Pfam
           profile: PF03061: thioesterase family protein
          Length = 190

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 306 LYQFSFTFRVKRLQPAAELQ-VLEWLCSKLVEARVPSNLREQLM 178
           +Y   F F++   +P  E + +  WL +K    R+PS++R + +
Sbjct: 138 IYFDHFIFKLPNQEPILEAKGIAVWLDNKYRPVRIPSSIRSKFV 181


>At1g68330.1 68414.m07805 expressed protein
          Length = 268

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 392 PFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLS 288
           P  +K   S  + +TF   RSA++SS  +S+SS S
Sbjct: 73  PVQIKKEESLPQTVTFRVPRSASLSSSSSSSSSSS 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,889,611
Number of Sequences: 28952
Number of extensions: 176665
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)