Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1100X
         (385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     25   0.26 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.0  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   2.4  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   5.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   7.4  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    20   9.7  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 295 YLHGYKISQMYFSFKEPPAAAHSACTS 215
           Y H   +S M F     PAAAHSA  S
Sbjct: 105 YNHSPHLSHMQFMQLPHPAAAHSALLS 131


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 102 TSSRTCGSFPRLYLKPRNVTKLS 170
           T    CG +  L+ +P +VTK+S
Sbjct: 60  TCRLVCGKYGALWPQPTSVTKIS 82


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +1

Query: 256 MRNTFAKFCIHEGNVWTHIEQNFN 327
           +   F    IH  N W  +E  FN
Sbjct: 81  VHKVFQHLMIHRPNWWHELETKFN 104


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -2

Query: 375 YSDKFLSFYRMSVASFIKVLLDVRPYITFMDTKFRKCI-SHSKNRPRLHIVRVRPTSYMD 199
           +  K +SF+++ + + I    D   ++      F   + S  K +PR H+VR      + 
Sbjct: 67  WMQKVVSFHKLKLTNNIS---DKHGFLKEKAVDFLTILNSMHKYQPRFHLVRANDILKLP 123

Query: 198 YKFY 187
           Y  +
Sbjct: 124 YSTF 127


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 105 LYSFSYFISSH 73
           LY FS F+S H
Sbjct: 306 LYEFSNFVSQH 316


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 261 SHSKNRPRLHIVRVRPTSYMDYKFY 187
           S  K +PR H+VR      + Y  +
Sbjct: 94  SMHKYQPRFHLVRANDILKLPYSTF 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,806
Number of Sequences: 336
Number of extensions: 1845
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)